We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3I3R | 2009 | 11 |
| 4EQY | 2012 | 11 |
| 3KM3 | 2009 | 11 |
| 4LGV | 2013 | 11 |
| 3EK2 | 2008 | 11 |
| 3EK1 | 2008 | 11 |
| 3UVE | 2011 | 11 |
| 3NDN | 2010 | 11 |
| 3GKA | 2009 | 11 |
| 4G7F | 2012 | 11 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7k43 | - | https://www.sciencedirect.com/science/article/pii/S2211124722005344 | Structures of Omicron spike complexes and implications for neutralizing antibody development | 2022 | H Guo, Y Gao, T Li, T Li, Y Lu, L Zheng, Y Liu, T Yang- Cell reports, 2022 - Elsevier | The recently reported structural model PDB entry 7T9K (Mannar et al., 2022) was used as an initial template for model building of the Omicron Spike trimer and ACE2. PDB entry 7K43 |
| 2 | 6wpt | 7jw0, 7jx3 | https://www.nature.com/articles/s41467-022-32665-7 | Omicron SARS-CoV-2 mutations stabilize spike up-RBD conformation and lead to a non-RBM-binding monoclonal antibody escape | 2022 | Z Zhao, J Zhou, M Tian, M Huang, S Liu, Y Xie- Nature, 2022 - nature.com | targeted by S309 in the prototype (yellow) ( PDB : 6WPT ) 6 and Omicron (orange). Key ( PDB : 7JW0) 24 was aligned with our Omicron RBD-S304 structure and these two structures were |
| 3 | 7jx3 | 7k45 | https://www.nature.com/articles/s41392-022-00910-6 | Parallel profiling of antigenicity alteration and immune escape of SARS-CoV-2 Omicron and other variants | 2022 | C Sun, YF Kang, YT Liu, XW Kong, HQ Xu- Signal transduction and, 2022 - nature.com | All the structural representations were rendered using ChimeraX-1.1.1 or PyMOL. The complex structures used in this study are available at PDB (Accession number: 7KZB, 7K45, 7JX3 , |
| 4 | 2lwk | - | https://portal.ichb.pl/wp-content/uploads/2023/02/Doktorat_AleksandraJarmoowicz.... | Small molecules interacting with Influenza virus RNA and SARS-CoV-2 RNA as potential inhibitors of replication | 2022 | A Jarmoowicz - portal.ichb.pl | M121 structural motif of segment 5 (+)RNA secondary structure was investigated by importance of the conserved secondary structure of mentioned structural motif and suggest that it |
| 5 | 5elo | - | https://www.nature.com/articles/s41467-022-33736-5 | Lysyl-tRNA synthetase, a target for urgently needed M. tuberculosis drugs | 2022 | SR Green, SH Davis, S Damerow, CA Engelhart- Nature, 2022 - nature.com | structure of M. tuberculosis LysRS was solved through molecular replacement using the structure of Cryptosporidium parvum LysRS ( PDB : 5elo ) 22 and the structure was refined using |
| 6 | 5vxt | - | https://www.sciencedirect.com/science/article/pii/S0304389422001923 | Construction of Biomimetic Nanozyme With High Laccase-and Catecholase-like Activity for Oxidation and Detection of Phenolic Compounds | 2022 | J Wang, R Huang, W Qi, R Su, Z He- Journal of Hazardous Materials, 2022 - Elsevier | Herein, inspired by the similar structure of active site in laccase and catecholase, a novel We expect this finding is beneficial to better understanding the structure -activity relationship ... Scheme 1. Schematic illustration of the synthesis of the I-Cu nanozyme with laccase- and catecholase-like activity by mimicking their catalytic center. (PDB code is 1KYA and 5VXT). |
| 7 | 3m1x | 3i3f, 3m4s, 3mqw | https://scripts.iucr.org/cgi-bin/paper?ft5116 | Crystal structure of a hypothetical protein from Giardia lamblia | 2022 | DK Beard, S Bristol, K Cosby, A Davis- Section F: Structural, 2022 - scripts.iucr.org | One of these proteins is a putative endonuclease from Entamoeba histolytica ( PDB entries 3mqw, 3m1x and 3m4s; 36% sequence identity and 56% coverage; Seattle Structural |
| 8 | 7r7n | - | https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(22)00311-5/fullt... | Monoclonal antibody therapies against SARS-CoV-2 | 2022 | D Focosi, S McConnell, A Casadevall- The Lancet Infectious, 2022 - thelancet.com | PDB 7K8M). Antibody binding classes 14 are displayed as mesh space-filling. (C) Structures in complex with a single RBD domain ( PDB 6XEY). Antibody binding classes RBS-A, RBS- ... S2D10633 7r7n RBM class III* |
| 9 | 4ncx | 4olf, 4q15, 4wi1 | https://www.nature.com/articles/s41467-022-32630-4 | Elucidating the path to Plasmodium prolyl-tRNA synthetase inhibitors that overcome halofuginoneresistance | 2022 | MA Tye, NC Payne, C Johansson, K Singh- Nature, 2022 - nature.com | Encouraged by these results, we evaluated the reported co-crystal structure of compound 2 bound to HsProRS ( PDB : 5VAD) more closely and noted that the cyclohexyl substituent ... Ligands were docked against the ProRS structures reported here (PDB 6T7K, 7QB7, 7QC1, and 7QC2) and previously (for HsProRS, PDB: 5VAD, 4HVC, 4K86, 4K87, 4K88, and 5V58; for PfcProRS, PDB 4Q15, 4NCX, 4YDQ, 4OLF, 5IFU, and 4WI1). |
| 10 | 3oj6 | - | https://www.nature.com/articles/s41467-022-33714-x | Sequential action of a tRNA base editor in conversion of cytidine to pseudouridine | 2022 | S Kimura, V Srisuknimit, KL McCarty, PC Dedon- Nature, 2022 - nature.com | as blasticidine-S deaminase ( PDB 3oj6 ) and cytidine deaminase ( PDB 4eg2). The structure of Blasticidine-S deaminase (BSD) is highly similar to the predicted structure of TrcP-NTD |