Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Structure	Year released	#citations
6N39	2018	1
2LPD	2012	1
8DTC	2022	1
6N7L	2018	1
5F9Z	2016	1
5WNN	2017	1
5JC8	2016	1
5ER6	2015	1
2M0N	2012	1
4Z04	2015	1

Manually reviewed citations

#	PDB	Additional SSGCID structures cited	Link	Title	Year	Citation	Highlighted abstract
1	3p3a	4lw8, 3hzu	https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25874	Challenges and opportunities of automated proteinprotein docking: HDOCK server versus human predictions in CAPRI Rounds 3846	2020	Y Yan, J He, Y Feng, P Lin, H Tao- Proteins: Structure, 2020 - Wiley Online Library	prediction of this dimer interface is expected. For T144, the TPC1 channel structures of mouse ( PDB ID: 6C9A) and Arabidopsis thaliana ( PDB ID: 5DQQ) were used as the templates to construct the human TPC2 channel structure ( PDB ID: 6NQ0). Despite the low sequence
2	6aqz	-	https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.26080	Crystal structure of a GDP6OMe4ketoLxyloheptose reductase from Campylobacter jejuni	2021	JH Kim, A Hofmann, JS Kim- Proteins: Structure, Function, and, 2021 - Wiley Online Library	Page 9. Discussion Comparison with other related proteins The crystal structure of Camylobacter MlghC revealed a two-domain architecture commonly found in 36.7; rmsd 1.9 ) and Naegleria fowleri ( PDB ID 6AQZ ; Z-score 34.3; rmsd 2.3 ), and GDP-4-keto-6
3	5br9	-	https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.26545	Protein target highlights in CASP15: Analysis of models by structure providers	2023	LT Alexander, J Durairaj- Proteins: Structure, 2023 - Wiley Online Library	structures superimposed on Ferrichrome-bound FhuA ( PDB ( PDB 1QFG, salmon) and FhuA from the target ( PDB 8B14, Red star: first resolved N-terminus of the different structures ... Structure of A. aeolicus TsaB. (A) The overlaid crystal structures of E. coli TsaB (PDB: 4YDU), T. maritima TsaB (PDB: 6N9A), S. typhimurium TsaB (PDB: 3ZET), P. s aeruginosa (PDB: 5BR9)
4	5bnt	-	https://onlinelibrary.wiley.com/doi/abs/10.1107/S2053230X17017241	Structure of aspartate semialdehyde dehydrogenase from Francisella tularensis	2018	NJ Mank, S Pote, KA Majorek- Section F: Structural, 2018 - Wiley Online Library	NADP+ (yellow spheres) is modeled using the structure of H. influenzae ASADH ( PDB PDB entry 3pzr; Pavlovsky et al., 2012), Pseudomonas aeruginosa ( PDB entry 5bnt ; Seattle Structural entry 1t4b; Nichols et al., 2004) and Haemophilus influenzae (HiASADH; PDB entry 1pqu
5	4nbr	-	https://onlinelibrary.wiley.com/doi/abs/10.1107/S2059798318005612	MRREX: molecular replacement by cooperative conformational search and occupancy optimization on lowaccuracy protein models	2018	JJ Virtanen, Y Zhang- Acta Crystallographica Section D, 2018 - Wiley Online Library	et al., 2016, 2017; Shrestha & Zhang, 2015), MR-REX takes advan- tage of this fact by predicting possible inaccurate segments of the structural model and Input and output data The input to MR-REX is a set consisting of structure -factor data, a structure file in PDB format and
6	6cum	-	https://onlinelibrary.wiley.com/doi/abs/10.1107/S2059798321004368	Introduction to molecular replacement: a time perspective	2021	E Dodson- Acta Crystallographica Section D: Structural, 2021 - Wiley Online Library	the phase error between the correct value and the phases generated from the best solution; Dphi_DM, the phase error after density modification, which was performed with Parrot, except for PDB entry 6cum , which used Rebuilt?, Yes if the test structure could be rebuilt
7	3sbx	3qua	https://onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.14287	Structural insight into molecular mechanism of cytokinin activating protein from Pseudomonas aeruginosa PAO1	2018	H Seo, KJ Kim- Environmental microbiology, 2018 - Wiley Online Library	29.9), Mycobacterium marinum (MmLOG, PDB code 3SBX , Z-score 28.7), Mycobacterium PDB code 5AJU, Z-score 27.2), with amino acid identities higher than 40%. In contrast, the structure of PA4923 shows relatively low homology to type-II LOGs, such as those from
8	4zju	-	https://onlinelibrary.wiley.com/doi/abs/10.1111/cbdd.13686	Ternary complex formation of AFN1252 with Acinetobacter baumannii FabI and NADH: Crystallographic and biochemical studies	2020	NK Rao, V Nataraj, M Ravi- Chemical Biology &, 2020 - Wiley Online Library	6AHE) with the NAD bound AbFabI ( PDB :4JZU) (243 C atoms; PDB ; 4ZJU ),showed an rms Structural superposition revealed no major conformational changes except in The crystal structure of AbFabI in the ternary complex is similar to the reported structures of EcFabI
9	3ek1	-	https://onlinelibrary.wiley.com/doi/abs/10.1111/febs.14497	A selective determination of the catalytic cysteine pKa of 2cysteine succinic semialdehyde dehydrogenase from Acinetobacter baumannii using burst kinetics and	2018	J Phonbuppha, S Maenpuen- The FEBS, 2018 - Wiley Online Library	An AbSSADH homology model was built based on the aldehyde dehydrogenase X-ray structure ( PDB : 3EK1 ) which Based on sequence homology with E. coli GabD for which the structure is known ( PDB :3JZ4), residues Cys75 and
10	7m53	7skz	https://onlinelibrary.wiley.com/doi/abs/10.1111/imr.70000	A Structural Voyage Toward the Landscape of Humoral and Cellular Immune Escapes of SARSCoV2	2025	J Liu, Y Wu, GF Gao- Immunological Reviews, 2025 - Wiley Online Library	Herein, from the perspectives of structural immunology, we outline the characteristics and : 7M53 ), and S2P6 (blue, PDB : 7RNJ) are superimposed with the prefusion S trimer ( PDB :