We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6MAO | 2018 | 1 |
| 5DB4 | 2016 | 1 |
| 6MQH | 2018 | 1 |
| 6MTZ | 2018 | 1 |
| 6PTR | 2019 | 1 |
| 6UHW | 2019 | 1 |
| 5WNN | 2017 | 1 |
| 6BN2 | 2018 | 1 |
| 6N1C | 2018 | 1 |
| 6NDS | 2019 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3u0g | 4whx | https://www.sciencedirect.com/science/article/pii/S0300908418303626 | Biochemical and structural insights into PLP fold type IV transaminase from Thermobaculum terrenum | 2019 | EY Bezsudnova, KM Boyko, AY Nikolaeva, YS Zeifman- Biochimie, 2019 - Elsevier | The results of independent MD simulations were qualitatively the same. 2.11. Structural analysis of the fold type IV PLP-dependent enzymes. Proteins which are structurally similar to TaTT were collected from the PDB bank using the structure similarity search module... similar short distance between the tyrosine OH group and the O3 atom of PLP was found in the BCAT structure from Burkholderia pseudomallei (PDB ID: 3U0G, 4WHX). |
| 2 | 3rr2 | 3hwi | http://repositorio.unicamp.br/handle/REPOSIP/335172 | Caracterizao da via de captura/assimilao de sulfato em Mycobacterium tuberculosis: estratgias para o desenvolvimento de inibidores e potenciais alvos para | 2019 | AN Cerone - 2019 - repositorio.unicamp.br | transport of several substances essential to the survival of organisms, which are poorly characterized in M. tuberculosis, the elucidation of structures and molecular SubI was expressed and purified and had its three-dimensional structure solved in the |
| 3 | 3k2c | - | https://www.sciencedirect.com/science/article/pii/S016158901930197X | The Schistosoma mansoni cyclophilin A epitope 107-121 induces a protective immune response against schistosomiasis | 2019 | TT de Melo, MM Mendes, CC Alves, GB Carvalho- Molecular, 2019 - Elsevier | The resulting structure was predicted using six templates (4I9Y: e3 sumo-protein ligase Cyclophilin from Homo sapiens, variant A; 1IHG: bovine cyclophilin 40, 3K2C : peptidyl-prolyl cuniculi; 1XO7: Cyclophilin from Trypanosoma cruzithe bovine Cyclophilin 40 ( PDB code: c1ihgA |
| 4 | 4xfd | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2018.1552199 | Validation of NAD synthase inhibitors for inhibiting the cell viability of Leishmania donovani: In silico and in vitro approach | 2019 | H Mandal, S Vijayakumar, S Yadav- Structure and, 2019 - Taylor & Francis | Skip to Main Content |
| 5 | 6b4a | - | https://www.biorxiv.org/content/10.1101/623140v1.abstract | A doublecortin-domain protein of Toxoplasma and its orthologues bind to and modify the structure and organization of tubulin polymers | 2019 | JM Leung, E Nagayasu, YC Hwang, P Pierce, IQ Phan- bioRxiv, 2019 - biorxiv.org | Page 5. 5 more in-depth analysis of the conoid fiber architecture , and a comparison of TgDCX and its eight residues 51-128, rmsd 1.905 ); TgDCX ( 6B4A , chain A, aa150-222) vs DCX domains (Figure 5A, Table 1), we used the structure of TgDCX148-243 as a model for |
| 6 | 4odj | - | https://www.ncbi.nlm.nih.gov/pmc/articles/pmc6794121/ | Genomewide analysis of mode of action of the S-adenosylmethionine analogue sinefungin in leishmania infantum | 2019 | A Bhattacharya, M Sharma, C Pakkinathan, BP Rosen- Msystems, 2019 - ncbi.nlm.nih.gov | C (B) The human LCMT1-PP2AC structure is presented SNF is a structural analogue of S-adenosylmethionine (AdoMet), a key methyl group donor to a |
| 7 | 4xk1 | - | https://www.sciencedirect.com/science/article/pii/S014181301930755X | N-terminal residues are crucial for quaternary structure and active site conformation for the phosphoserine aminotransferase from enteric human parasite E. histolytica | 2019 | RK Singh, P Tomar, S Dharawat, S Kumar- International journal of, 2019 - Elsevier | 3. Comparative analysis, using the RAPIDO server, of PSAT structures from various organisms with the EhPSAT structure . PDB IDs, Sequence identity (%), RMSD with EhPSAT monomer in (number of residues compared) 4XK1 (P. aeruginosa) [38], 40, 1.52 (for 337 residues) |
| 8 | 3tf6 | - | https://www.research-collection.ethz.ch/bitstream/handle/20.500.11850/337776/1/H... | Neural networks for improving drug discovery e fficiency | 2019 | H Hassan Harrirou - 2019 - research-collection.ethz.ch | The PDBBind 2018 general set version contains 19588 biomolecu- lar structures , for which some SMILES or FASTA), or full 3D representations of atom coordinates (ie PDB ), with bonds preferable properties of inputs to most machine-learning algorithms: a fixed-size structure |
| 9 | 3rr2 | - | https://link.springer.com/article/10.1007/s13205-019-1572-4 | Insights into multifaceted activities of CysK for therapeutic interventions | 2019 | P Joshi, A Gupta, V Gupta- 3 Biotech, 2019 - Springer | PDB ID (References) 3RR2 (Baugh et al A recent study where a natural A241V variant of S. flexneri CysE has unstable quaternary assembly and reduced activity, suggests transient dissociation of quaternary structure of CysE to be another regulatory mechanism for cysteine |
| 10 | 3oc6 | 3ico, 3v2i | https://www.mdpi.com/2073-4352/9/11/597 | Carboxylic Ester Hydrolases in Bacteria: Active Site, Structure, Function and Application | 2019 | C Oh, TD Kim, KK Kim- Crystals, 2019 - mdpi.com | In the Protein Data Bank ( PDB ), 136 crystal structures of bacterial CEHs (424 PDB codes) from The // sandwich architecture is most frequently found in CEHs, but 3-solenoid, are widely used in industrial applications, and are the objects of research in structure - or mutation ... 6-phosphogluconolactonases from M. smegmatis (representative PDB code: 3OC6) [140] belonging to group 3-4 CEHs contains His151-Glu149 as a catalytic dyad with nucleophilic water (Figure 3I). |