We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6UDF | 2019 | 1 |
| 6NB7 | 2019 | 36 |
| 6PTG | 2019 | 4 |
| 6C9C | 2019 | 2 |
| 6DUI | 2019 | 1 |
| 6OJM | 2019 | 1 |
| 6X79 | 2020 | 27 |
| 6XR5 | 2020 | 0 |
| 6XDK | 2020 | 1 |
| 6UWQ | 2020 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4h3e | - | http://onlinelibrary.wiley.com/doi/10.1002/qua.24650/full | A theoretical study on the reaction pathways of peroxynitrite formation and decay at nonheme iron centers | 2014 | AA Attia, R Silaghi-Dumitrescu - International Journal of Quantum Chemistry, 2014 - Wiley Online Library | ... The quantum chemical calculations were performed on four chemical models. These models comprised the active sites of SOR from Pyrococcus furiosus (PDB id 1DQI) and FeSOD from Trypanosoma cruzi (PDB id 4H3E) in their ferrous and ferric forms. ... |
| 2 | 6nb8 | - | https://www.biorxiv.org/content/10.1101/2021.04.12.439478.abstract | Epitope profiling of coronavirus-binding antibodies using computational structural modelling | 2021 | SA Robinson, MIJ Raybould, C Schneider, WK Wong- bioRxiv, 2021 - biorxiv.org | Analysis of SARS-CoV-2antibody structural complexes A total of 48 antibodies and 12 nanobodies had at least one published solved X-ray crystal structure in complex to the spike receptor binding domain (RBD, see Table S1 and Table S2 for names and PDB codes), while |
| 3 | 3sdo | - | http://link.springer.com/article/10.1007/s12033-015-9897-7 | Evaluation of the Conformational Stability of Recombinant Desulfurizing Enzymes from a Newly Isolated Rhodococcus sp. | 2016 | F Parravicini, S Brocca, M Lotti - Molecular biotechnology, 2016 - Springer | ... In this perspective, we built by homology a 3D model of DszA, whose crystallographic structurehas not been solved yet and ... against the Protein Data Bank (PDB) revealed that DszA sharesthe highest identity with a nitrilotriacetate monooxygenase (PDB code 3SDO.1.A ... |
| 4 | 3s6l | - | https://www.frontiersin.org/articles/10.3389/fbioe.2020.613986/pdf | Modelled structure of the cell envelope proteinase of Lactococcus lactis | 2020 | EB Hansen, P Marcatili- Frontiers in bioengineering and, 2020 - frontiersin.org | The architecture of the L. lactis CEP shares features with a large number of serine proteases to use current state of the art structure prediction algorithms to establish a structural model of software (version 2.3.3)2 was used for visualization and editing of protein structure PDB files |
| 5 | 7jvc | - | https://link.springer.com/article/10.1186/s12951-025-03243-y | A bivalent spike-targeting nanobody with anti-sarbecovirus activity | 2025 | IC Swart, OJ Debski-Antoniak, A Zegar- Journal of, 2025 - Springer | Structural alignment of an ACE2 RBD structure ( PDB : 6VW1) [37] with a single molecule of 7F and single RBD showed that the interaction major-interface would not hinder ACE2 |
| 6 | 7jzl | 7jzm, 7jzn, 7jzu | https://advanced.onlinelibrary.wiley.com/doi/abs/10.1002/adhm.202503487 | Multivalent Protein Nanorings for Broad and Potent SARSCoV2 Neutralization | 2025 | M Behbahanipour, C Goldin, CA Prato- Advanced, 2025 - Wiley Online Library | ), their structural orientation within each differs. Both LCB1 and LCB3 are small 3-helix bundles, but whereas LCB1 ( PDB ID 7JZL ) binds in an up-down-up orientation, LCB3 ( PDB ID |
| 7 | 7ki4 | 7ki6 | https://advanced.onlinelibrary.wiley.com/doi/abs/10.1002/advs.202501996 | Potent Crossneutralizing Antibodies Reveal Vulnerabilities of Henipavirus Fusion Glycoprotein | 2025 | Y Ren, P Fan, X Zhang, T Fang, Z Chen- Advanced, 2025 - Wiley Online Library | structure of LayV F ( PDB ID: 8FEL). The root mean square deviation between the model and the reference LayV F or an incomplete postfusion NiV F ( PDB from the PDB database onto This study also used 6TYS, 7KI4, 7KI6, 7UOP, 7UP9, 7UPA, 7UPK, 7UPB, 7UPD, 6T3F, 8FEL, 8DMJ, and 7FAB from the Protein Data Bank. The data that support the findings of this study are available from the corresponding author upon reasonable request. |
| 8 | 7l6s | - | https://www.nature.com/articles/s41598-025-93122-1 | Structural insights into fungal and human topoisomerase II with implications for in silico antifungal drug design | 2025 | S Sappati, K Kondaka, I Gabriel, M Baginski- Scientific Reports, 2025 - nature.com | Our analysis extended to include representative from Amoebozoa (Balamuthia mandrillaris), utilizing PDB ID 7L6S for a comprehensive comparative study. |
| 9 | 7kqa | - | https://pubs.acs.org/doi/abs/10.1021/acs.biochem.5c00284 | SH N Contacts between Side Chains of Cys and Backbone Nitrogen Atoms in Proteins Are Weak Interactions and Not Hydrogen Bonds | 2025 | P Singh, R Sankararamakrishnan- Biochemistry, 2025 - ACS Publications | We retained the same internal parameters found in PDB structures for all non-self-contacting Cys involved in potential SHN hydrogen bonds. When B3LYP was used, only 13 to 23 |
| 10 | 3lrf | - | https://www.sciencedirect.com/science/article/pii/S1093326323001638 | Identification of novel compounds against Acinetobacter baumannii 3-oxoacyl-[acyl-carrier-protein] synthase I (FabB) via comprehensive structure-based computational approaches | 2023 | E Albayrak, S Koer, O Mutlu- Journal of Molecular Graphics and Modelling, 2023 - Elsevier | FabB from Vibrio cholerae ( PDB ID: 4XOX ) was selected as a template structure with 57.46% identity for the homology modeling. After modeling, GMQE (Global Model Quality Estimate) ... |