We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KLI | 2020 | 1 |
| 5JYD | 2016 | 1 |
| 6NMO | 2020 | 1 |
| 6B4P | 2017 | 1 |
| 6O5D | 2019 | 1 |
| 6MTZ | 2018 | 1 |
| 7KM7 | 2021 | 1 |
| 6OEW | 2019 | 1 |
| 3G87 | 2009 | 1 |
| 6OZD | 2019 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3s99 | - | https://scripts.iucr.org/cgi-bin/paper?jb5014 | The evolving story of AtzT, a periplasmic binding protein | 2019 | ML Dennis, L Esquirol, T Nebl, J Newman- Section D: Structural, 2019 - scripts.iucr.org | (2019). D75, 9951002 Page 5. cluster protein and had electron density in the binding site for a purine. Post hoc analysis of the structure and sequence showed that PDB entry 3s99 has 54% sequence identity and an rmsd of 1.2A (over $330 residues) to AtzT |
| 2 | 3sdo | - | https://www.biorxiv.org/content/10.1101/2020.08.24.261826v1.abstract | On the diversity of F420-dependent oxidoreductases: a sequence-and structure-based classification | 2020 | ML Mascotti, MJ Ayub, M Fraaije- bioRxiv, 2020 - biorxiv.org | monooxygenase (NTA_MO, PDB : 3sdo ), as well as the well-known bacterial FMN- dependent luciferases (eg.: LuxB, PDB : 1luc) [28]. The topology suggests that cofactor vary considerably in structure and function, and comprise the F420H2-NADP+ oxidoreductases |
| 3 | 3kx6 | - | http://www.sciencedirect.com/science/article/pii/S002228361400518X | Structural and Functional Divergence of the Aldolase Fold in Toxoplasma gondii | 2014 | ML Tonkin, AS Halavaty, R Ramaswamy, J Ruan… - Journal of molecular …, 2014 - Elsevier | ... We also determined the structure of TgDPA in a different crystal form (data not shown but structuredeposited with identifier PDB ID 3QYQ ... However, preliminary sequence and structural comparisonof several dR5P aldolases (rmsd of < 2.0 Å and sequence homology as low ... |
| 4 | 3o0m | - | http://jb.asm.org/content/199/17/e00304-17.short | The DNA Repair Repertoire of Mycobacterium smegmatis FenA Includes the Incision of DNA 5 Flaps and the Removal of 5 Adenylylated Products of Aborted Nick | 2017 | ML Uson, S Ghosh, S Shuman - Journal of bacteriology, 2017 - Am Soc Microbiol | ... IMPORTANCE Structure -specific DNA endonucleases are implicated in bacterial DNA replication, repair, and recombination, yet there is scant knowledge ... We discuss the properties of mycobacterial FenA in light of insightful structural studies of eukaryal flap endonucleases (11 ... MSMEG_5028 (Rv1262c) has been characterized structurally (PDB entry 3O0M), but its biochemical activity is uncharted. |
| 5 | 3o0m | - | http://jb.asm.org/content/early/2017/06/14/JB.00304-17.abstract | The DNA repair repertoire of Mycobacterium smegmatis FenA includes the incision of DNA 5'flaps and the removal of 5'adenylylated products of aborted nick ligation | 2017 | ML Uson, S Ghosh, S Shuman- Journal of bacteriology, 2017 - Am Soc Microbiol | MSMEG_5871 (Rv0759c) has not been characterized. MSMEG_5028 (Rv1262c) has been characterized structurally (PDB entry 3O0M), but its biochemical activity is uncharted. |
| 6 | 6q09 | - | https://www.sciencedirect.com/science/article/pii/S0003986121001673 | Diversity of structures and functions of oxo-bridged non-heme diiron proteins | 2021 | MLC Nogueira, AJ Pastore, VL Davidson- Archives of Biochemistry and, 2021 - Elsevier | Archives of Biochemistry and Biophysics. Diversity of structures and functions of oxo-bridged non-heme diiron proteins. ... Fig. 3. Examples of the different combinations of amino acid residues that coordinate the irons in hemerythrin-like proteins. A. HLP from Mycobacterium kansasii with 4H/2E/1Y coordination (PDB entry 6Q09) |
| 7 | 3o0m | - | http://search.proquest.com/openview/769ccf38b4f4380a7bc1930f51547727/1?pq-origsi... | Characterization of Mycobacterial Flap Endonuclease FenA and RNA Helicase HelY | 2018 | MLL Uson - 2018 - search.proquest.com | There, she focused on the detection of circulating tumor cells and structural characterization of EphA3, a 122 Figure 4.3 Manganese ions in the FenA active site ..... 126 Figure 4.4 Active site architecture and structure -guided mutagenesis |
| 8 | 4q12 | 4pzu | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.7b00506 | Biochemical Investigation of Rv3404c from Mycobacterium tuberculosis | 2017 | MM Dunsirn, JB Thoden, M Gilbert, HM Holden - Biochemistry, 2017 - ACS Publications | ... and 4Q12). Whereas this protein was suggested to be a sugar N-formyltransferase, ... RelevantX-ray data collection statistics are listed in Table 1. The structure was solved via molecularreplacement with PHASER21 and using PDB entry 4PZU as a search probe. ... |
| 9 | 3h81 | - | https://www.rug.nl/research/portal/files/48620248/Chapter_2.pdf | Genomics-based discovery and engineering of biocatalysts for conversion of amines | 2017 | MM Heberling, CP Postema, TJ Meijer, M Otzen - rug.nl | peptides and macrolactam polyketides through de novo biosynthesis [1,2]. The structural diversity and The structure of -Val (or other dialkylglycines) restricts the diversity of feasible ID) and an enoyl-CoA hydratase from Mycobacterium tuberculosis ( PDB : 3H81 , 62%), as seen |
| 10 | 3ndn | - | http://mic.sgmjournals.org/content/160/Pt_8/1571.short | Bacterial methionine biosynthesis | 2014 | MP Ferla, WM Patrick - Microbiology, 2014 - Soc General Microbiol | ... 2). Its presence in P. aeruginosa and P. putida has been discussed (Foglino et al., 1995; Alaminos & Ramos, 2001), and an unpublished structure of a Mycobacterium tuberculosis O-succinylhomoserine thiolase has been deposited in the Protein Data Bank (PDB ID 3NDN). ... |