We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7MCJ | 2022 | 1 |
| 7N4D | 2021 | 1 |
| 6WSB | 2020 | 1 |
| 4J5I | 2013 | 1 |
| 4IZ9 | 2013 | 1 |
| 6APE | 2017 | 1 |
| 3PE8 | 2010 | 1 |
| 4Y0E | 2015 | 1 |
| 7SIR | 2021 | 0 |
| 8D1X | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4efi | - | https://patents.google.com/patent/US20160201095A1/en | Methods for the site-selective introduction of halogen into natural products | 2016 | MCY Chang, MC Walker, BW Thuronyi- US Patent App. 14/913,601, 2016 - Google Patents | domain. The NphT7 structure was predicted using Phyre2 (Kelley, et al., Nat. Prot., 4:363-371 (2009)) and based on a type III 3-oxoacyl-(acyl-carrier protein) synthase from Burkholderia xenovorans ( PDB ID 4EFI ). Despite |
| 2 | 3tzs | - | https://patents.google.com/patent/US20160282341A1/en | Plasmonic biosensors with built-in artificial antibodies | 2016 | S Singamaneni, L Tian, KK Liu, A Abbas- US Patent App. 15, 2016 - Google Patents | organic silane monomers are functionalized prior to polymerizing the functional monomers onto the template molecule-nanostructure core structure 6.8, MW=64.5 kDa) or 0.5 mg/mL recombinant human neutrophil gelatinase-associated lipocalin (NGAL; pdb ID: 3TZS , Ip=8.9 |
| 3 | 3lgj | 3pgz | https://patents.google.com/patent/US20180179500A1/en | Modified enzymes | 2018 | AJ Heron, RV Bowen, M Bruce- US Patent App. 15, 2018 - Google Patents | In order to assess whether a suitable protein structure exists to use as a template to build a protein model, a search is performed on the protein data bank ( PDB ) database The sequence alignment and template structure are then used to produce a structural model of the The polynucleotide binding motif may be selected from any of those shown in Table 5 below. Bartonella 3LGJ, Q6G302 homo-tetramer |
| 4 | 4ot8 | - | https://patents.google.com/patent/US20180265905A1/en | Chemoenzymatic synthesis of peptide beta-lactones and beta-hydroxy acids | 2018 | TA Wencewicz, JE Schaffer, MR Reck- US Patent App. 15/921,442, 2018 - Google Patents | Although the biological target of RC-Obi is unknown, bacterial transpeptidases are thought to be potential targets due to the structural similarity of RC-Obi to monocyclic -lactam antibiotics and the FIG. 14D is an X-ray crystal structure of the EntF TE domain ( PDB 3TEJ). FIG |
| 5 | 4dxl | - | https://patents.google.com/patent/US20180271098A1/en | Oxadiazole and phenol derivatives as antibacterial and/or herbicidal agents | 2018 | TJ Hagen, M Thompson, JR Troxell- US Patent App. 15, 2018 - Google Patents | To date, there are 17 crystal structures of six different species of IspE deposited in the PDB with 17 different ligands FIG. 11 . X-Ray Crystal Structure of Mycobacterium abscessus IspE with ATP (red) and CMP (blue) Bound to Active Site; PDBID 4DXL . FIG. 12 |
| 6 | 3oa3 | 3ndo, 3ngj | https://patents.google.com/patent/US20180340193A1/en | Methods And Microorganisms For The Production Of 1, 3-Butanediol | 2018 | R Mahadevan, A Yakunin, P Gawand- US Patent App. 15, 2018 - Google Patents | 2.4.). In some embodiments, DERA enzymes can be described as class I aldolases that form covalent Schiff base intermediates. In all studied structures , DERA adopts the classical eight-bladed TIM barrel fold. The oligomerisation |
| 7 | 5vwm | - | https://pdfs.semanticscholar.org/1774/b2148932698ea43fe239489547556ff273f3.pdf | In silico study of various compounds from essential oil of Cymbopogon winterianus against Pseudomonas aeruginosa targets | 2019 | Moura, A Monteiro, M Maia, N Sousa, G Rodrigues - 2019 - pdfs.semanticscholar.org | Protein resolution values were 2.1 for ExoA ( PDB ID 1XK9), 1.8 for LpxC ( PDB ID 5VWM ) and 2.31 for PBP3 ( PDB ID 4KQO). All presented inhibitors coupled to their crystallographic structure , which allowed the delimitation of the active site of each protein |
| 8 | 3gwc | - | https://pdfs.semanticscholar.org/756c/21ba7ab35e0016d697910450710130b7af99.pdf | Similarity in the Amino Acid Sequences of Mycobacterium tuberculosis Protein Targets Involved in Binding Sites of Docking with Thiacetazone | 2016 | M Mafakheri, S Sardari- Pharm Anal Acta, 2016 - pdfs.semanticscholar.org | reviewed and well known M. tuberculosis protein target was chosen (Table 1) then they were downloaded in pdb format from 68 3GWC Transferase -6.24 RRRHHHHM 21. A Structural View of Biology, An Information Portal to 124286 Biological Macromolecular Structures . 22 |
| 9 | 6vyb | - | https://pdfs.semanticscholar.org/7a8c/b4cb523ba6ce60d7e87c02e8558c13363b41.pdf | Comparative docking studies on curcumin with COVID-19 proteins | 2020 | R Suravajhala, A Parashar, B Malik, VA Nagaraj - 2020 - pdfs.semanticscholar.org | were subjected to a 3D structure generation on CORINA [12] using their SMILE Preparation of proteins and grid parameters: The protein data bank ( PDB ) structures of different proteins were retrieved from RCSB membrane protein (6M17), polymerase (6M71), spike ( 6VYB ) |
| 10 | 5unb | - | https://pdfs.semanticscholar.org/9d45/bcaa3c016845d28a2001ff2f58c6ca8ea726.pdf | Supplementary materials to PconsC4: fast, free, easy, and accurate contact predictions. | 2018 | M Michel, D Menndez-Hurtado, A Elofsson - 2018 - pdfs.semanticscholar.org | PconsC4 is trained on a set of 2759 proteins culled from PDB using PISCES (Wang and in (Michel et al., 2017) and the 46 proteins from CASP12 with available structures , Table S6 It is pre-trained to predict secondary structure and surface accessibility for each residue (golden |