We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6OMK | 2019 | 1 |
| 6UDF | 2019 | 1 |
| 5HW3 | 2016 | 1 |
| 5IDQ | 2016 | 1 |
| 5IDT | 2016 | 1 |
| 5J46 | 2016 | 1 |
| 5JLA | 2016 | 1 |
| 5TQV | 2016 | 1 |
| 5TT0 | 2016 | 1 |
| 5U8O | 2017 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3sds | - | http://dx.plos.org/10.1371/journal.pone.0031528 | New Insight into the Transcarbamylase Family: The Structure of Putrescine Transcarbamylase, a Key Catalyst for Fermentative Utilization of Agmatine | 2012 | LM Polo, F Gil-Ortiz, A Cant?n, V Rubio - PloS one, 2012 - dx.plos.org | ... the closest structures to that of the PTC subunit those of the subunits of pfOTC, Thermotoga maritima OTC (tmOTC) and hOTC, (Protein Databank files 1PVV ... PDB files are the following for OTCs: human, 1OTH; Ovis aries, 1FB5; Coccidioides immitis, 3SDS; P. furiosus1PVV ... |
| 2 | 4g6c | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744477/ | New Putative Antimicrobial Candidates: In silico Design of Fish-Derived Antibacterial Peptide-Motifs | 2020 | H Okella, JJ Georrge, S Ochwo, C Ndekezi- Frontiers in, 2020 - ncbi.nlm.nih.gov | a global docking procedure in four folds, motif-based prediction based on peptide conformation, rigid-body docking, scoring based on structural clustering; and final structure minimization. ... The affinity of peptide-motifs A15_B and A15_E was highest within chains of the target proteins (PDB ID 1rrv, 4g6c, and 4oj8). |
| 3 | 6cfp | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2020.1806112 | New anti-viral drugs for the treatment of COVID-19 instead of favipiravir | 2020 | A Akta, B Tzn, R Aslan, K Sayin- Biomolecular Structure, 2020 - Taylor & Francis | According to Table 2, the 6CFP protein is not inhibited by any ligands RNA polymerase proteins with PDB IDs of 6NUR and 6NUS were reported in late 2019 and early In this calculation, the ligand and protein are flexible and solvent molecules surround the entire structure |
| 4 | 3gaf | - | http://insubriaspace.cineca.it/handle/10277/445 | New microbial hydroxysteroid dehydrogenases and their synthetic application for the selective modification of bile acids. | 2011 | EE Ferrandi - 2011 - insubriaspace.cineca.it | ... but it has been hypothesized that binding of bile acids to hydrophobic pocket(s) of the proteasesmay destabilize their structure, making additional ... Bile salts are used for the structural rigidity ofthe steroid skeleton, which allows the formation of stable cavities, and because both ... |
| 5 | 3uve | - | https://www.biorxiv.org/content/10.1101/2021.08.17.456622.abstract | Nicotinate degradation in a microbial eukaryote: a novel, complete pathway extant in Aspergillus nidulans | 2021 | E Bokor, J Amon, M Varga, A Szekeres, Z Hegedus- bioRxiv, 2021 - biorxiv.org | 372 code: 3awd) and carveol dehydrogenase CDH from Mycobacterium avium ( PDB code: 3uve model of HxnN with its closest known 426 structural homolog, FAAH1 ( PDB code: 2vya), |
| 6 | 6nb7 | - | https://www.mdpi.com/796898 | Nicotinic cholinergic system and COVID-19: in silico identification of an interaction between SARS-CoV-2 and nicotinic receptors with potential therapeutic targeting | 2020 | K Farsalinos, E Eliopoulos, DD Leonidas- International journal of, 2020 - mdpi.com | amino acid transporter ( PDB id: 6M18), the structure of a neutralizing to ( PDB id: 6NB7 ) and the extracellular domain of the nAChR 9 subunit in complex with -bungarotoxin ( PDB id: |
| 7 | 6mg6 | - | https://www.tandfonline.com/doi/abs/10.1080/07388551.2020.1827367 | Nitrilase: a promising biocatalyst in industrial applications for green chemistry | 2021 | JD Shen, X Cai, ZQ Liu, YG Zheng- Critical Reviews in, 2021 - Taylor & Francis | 6I00), Saccharomyces cerevisiae ( PDB : 4H5U and 1F89), Pyrococcus abyssi ( PDB : 3KLC), Helicobacter pylori ( PDB : 6MG6 ) and Synechocystis ( PDB : 3WUY) has been obtained However, with most of the nitrilases, the crystal structure had been resolved, came from eukaryotes |
| 8 | 3swt | - | https://rc.library.uta.edu/uta-ir/handle/10106/29306 | Non-Heme Iron Oxygenases: An Investigation of the Protein Ligand Effects on the Chemical Reactivity in MiaE and Cysteamine Dioxygenases | 2019 | P Palacios - 2019 - rc.library.uta.edu | enzyme toluene monooxygenase in Figure 1.1 (panel B).14 The structural frame of the non-heme iron Figure 1.2 X-ray crystal structure of the Fe(II)/-ketoglutarate dependent enzyme TauD from Myobacterium marinum ( PDB : 3SWT )22 Page 22. 10 |
| 9 | 3laa | 4lgo, 3s6l | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7688925/ | Non-adaptive evolution of trimeric autotransporters in Brucellaceae | 2020 | MR Rahbar, M Zarei, A Jahangiri, S Khalili- Frontiers in, 2020 - ncbi.nlm.nih.gov | domain from Haemophilus influenzae genome ( PDB ID:1S7M; Yeo et al., 2004); structure of the parallel beta-roll collagen-binding domain of Yersinia enterocolitica adhesin YadA ( PDB ID: 1P9H Batch analyzes of the dataset suggested the existence of a few structural domains |
| 10 | 4j3g | - | https://www.nature.com/articles/s41477-017-0061-1 | Non-specific activities of the major herbicide-resistance gene BAR | 2017 | B Christ, R Hochstrasser, L Guyer, R Francisco- Nature plants, 2017 - nature.com | We report the crystal structures of BAR, and further delineate structural basis for its substrate selectivity and catalytic mechanism... The search model was an ensemble model generated with Ensembler using eight protein structures homologous to BAR (PBD codes and % identity to BAR: 2JLM (28%), 3DR8 (35%), 4J3G (31%), 4JXQ (33%), 4MBU ... |