We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6Q07 | 2020 | 3 |
| 6Q09 | 2020 | 8 |
| 6Q10 | 2019 | 0 |
| 6Q1Y | 2019 | 0 |
| 6TYJ | 2020 | 0 |
| 6TYS | 2020 | 25 |
| 6TZ8 | 2019 | 10 |
| 6U1T | 2019 | 6 |
| 6U3L | 2020 | 1 |
| 6U79 | 2020 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4j5i | - | https://scholarship.rice.edu/handle/1911/95572 | Structural Studies in Natural Product Biosynthesis and Structure Determination | 2016 | L Han - 2016 - scholarship.rice.edu | Page 1. Page 2. ABSTRACT Structural Studies In Natural Product Biosynthesis And Structure Determination by Lu Han Natural living organisms produce many natural compounds with diverse structures . They are one of the most productive sources of drug/bio-probe ... Taurine dioxygenase TauD from Mycobacterium smegmatis, Z= 17.5, r.m.s.d. 3.0Å over aligned Cα residues, id 15% (PDB 4J5I) (Baugh et al., 2015). |
| 2 | 4jcp | - | https://www.nature.com/articles/s41598-018-23821-5 | Structural basis of interaction between dimeric cyclophilin 1 and Myb1 transcription factor in Trichomonas vaginalis | 2018 | T Martin, YC Lou, CC Chou, SY Wei, S Sadotra- Scientific reports, 2018 - nature.com | S1). Like Caenorhabditis elegans Cyp3 (Ccyp3; PDB : 1DYW) and Brugia malayi CypB (BcypB; PDB : 4JCP ), TvCyP1 is a divergent loop cyclophilin and possesses an additional loop in the a) Structure of TvCyP1 dimer showing secondary structural elements ( PDB : 5YB9 |
| 3 | 4jgb | 4jga | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.200099 | TAK1: a potent tumour necrosis factor inhibitor for the treatment of inflammatory diseases | 2020 | J Totzke, SA Scarneo, KW Yang- Open, 2020 - royalsocietypublishing.org | A general core structure for type II binders has been developed, consisting of a hydrophobic moiety Structural disorder of this region is often cited as a reason for the missing residues of Ligand 10 (purple, PDB 4JGA), 11 (orange, PDB 4JGB ) and 12 (dark green, PDB 4JGD) are |
| 4 | 4jgb | 4jga | https://dukespace.lib.duke.edu/dspace/bitstream/handle/10161/16337/Totzke_duke_0... | Targeting Transforming Growth Factor Beta-Activated Kinase 1 as a Therapeutic | 2017 | J Totzke - 2017 - dukespace.lib.duke.edu | 50 3.4 Structural and functional similarities between TAK1 and related kinases ..... 50 Page 8. viii 4 Figure 2: Crystal structure TAK1 ( PDB 5V5N, left ribbon, right hydrophobicity surface) .... 11 |
| 5 | 4jnq | - | http://www.mdpi.com/2218-0532/85/1/5 | Natural Products as New Treatment Options for Trichomoniasis: A Molecular Docking Investigation | 2017 | MS Setzer, KG Byler, IV Ogungbe, WN Setzer - Scientia Pharmaceutica, 2017 - mdpi.com | ... Page 8. Sci. Pharm. 2017, 85, 5 8 Figure 4. Overlay of the protein structures of Brucella melitensisTxR, PDB 4JNQ [24] (red ribbon), and the homology model of Trichomonas vaginalis TxR (blueribbon). The co-crystallized ligand is shown as a wireframe structure. ... |
| 6 | 4jpd | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0184961 | SAXS and stability studies of iron-induced oligomers of bacterial frataxin CyaY | 2017 | M Fekry, W Alshokry, P Grela, M Tchrzewski- PloS one, 2017 - journals.plos.org | ... The crystal structure of the CyaY monomer ( PDB entry 1EW4) was used for building a model, which was assumed to be a ... The ratio between the emission intensities at 350 nm and 330 nm (F350/F330) was used to track the structural changes with increasing temperature. ... |
| 7 | 4jpd | - | https://ri.conicet.gov.ar/handle/11336/83435 | Dinmica molecular y consolidacin estructural de la frataxina humana | 2016 | SE Faraj - 2016 - ri.conicet.gov.ar | The Alteration of the C-terminal Region of Human Frataxin Distorts its Structural Dynamics and Function Abajo: estructura de las protenas NB7804A de Bacillus halodurans ( PDB ID: 2KL4, amarillo); CyaY de Burkholderia cenocepacia ( PDB ID: 4JPD , gris), CyaY de |
| 8 | 4jv3 | 4f32 | https://pubs.acs.org/doi/abs/10.1021/acsmedchemlett.0c00653 | Semisynthesis and Biological Evaluation of Platencin Thioether Derivatives: Dual FabF and FabH Inhibitors against MRSA | 2021 | Y Li, X Weng, Y Deng, J Pan, S Zhu- ACS medicinal, 2021 - ACS Publications | The discovery and clinical use of multitarget monotherapeutic antibiotics is regarded as a promising approach to reduce the development of antibiotic resistance. Platencin (PTN), a potent natural a... On the basis of the X-ray structures of PTN with ecFabF(C163Q), Burkholderia vietnamiensis FabF, and Brucella melitensis FabB (PDB IDs 3HO2, 4F32, and 4JV3, respectively) as well as that of platencin A1 with ecFabF-(C163Q) (PDB ID 3HO9), it is likely that these PTN derivatives may also interact with FabF or |
| 9 | 4jwp | - | https://www.nature.com/articles/s41467-024-49952-0 | Acetyl-CoA synthetase activity is enzymatically regulated by lysine acetylation using acetyl-CoA or acetyl-phosphate as donor molecule | 2024 | C Qin, LG Graf, K Striska, M Janetzky, N Geist- Nature, 2024 - nature.com | structure of Ribosomal-protein-alanine N-acetyltransferase from Brucella melitensis solved in complex with Acetyl-CoA ( PDB : 4JWP The resulting structural ensembles reveal that acetyl- |
| 10 | 4k6f | - | https://repository.up.ac.za/handle/2263/62274 | Cloning, expression and molecular modeling of the anthocyanidin reductase (FaANR) gene during strawberry fruit development | 2017 | PC Mandave, AA Kuvalekar, NL Mantri, MA Islam - 2017 - repository.up.ac.za | on 3D structure of ANR obtained from homology modeling technique to check binding interaction of template molecule ( PDB ID: 4K6F ) with bound Their complex structure limits the com- mercial chemical synthesis and we are therefore highly re- liant on plants, especially |