We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3GK3 | 2009 | 1 |
| 3TL6 | 2011 | 1 |
| 5IFY | 2016 | 1 |
| 6OMZ | 2019 | 1 |
| 6W14 | 2020 | 1 |
| 6MQH | 2018 | 1 |
| 3GNN | 2009 | 1 |
| 6OVI | 2019 | 1 |
| 6CKQ | 2018 | 1 |
| 3GVC | 2009 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ixc | - | http://www.sciencedirect.com/science/article/pii/S002228361300003X | PIM: Phase Integrated Method for Normal Mode Analysis of Biomolecules in a Crystalline Environment | 2013 | M Lu, J Ma - Journal of molecular biology, 2013 - Elsevier | ... There are totally 29 out of the 65 space groups in this case, shown in the leftmost column of Table 1. In the Protein Data Bank (PDB), 73.3% of the structures belong to this case. ... In the PDB, 24.0% of the structures belong to the case. ... |
| 2 | 3e7d | - | http://www.freepatentsonline.com/y2016/0122392.html | POLYPEPTIDES FOR USE IN SELF-ASSEMBLING PROTEIN NANOSTRUCTURES | 2016 | D Baker, JB Bale, NP King - US Patent , 2016 - freepatentsonline.com | ... panel B) comprise 12 pentamers (dark grey) and 30 dimers (light grey), and the I32-28 designmodel and crystal structure (panel C ... Starting proteins were those derived from pentameric, trimeric,and dimeric crystal structures from the Protein Data Bank (PDB), along with a ... |
| 3 | 4j3g | - | https://scholarworks.sjsu.edu/etd_projects/829/ | PREDICTING SWITCH-LIKE BEHAVIOR IN PROTEINS USING LOGISTIC REGRESSION ON SEQUENCE-BASED DESCRIPTORS | 2019 | B Strauss - 2019 - scholarworks.sjsu.edu | set. Validated residue binary assignments of 0 (no change in secondary structure ) and 1 (change in secondary structure ) were determined (DSSP) from 3D X-ray structures for sets of virtually identical chains crystallized under different conditions |
| 4 | 3gwc | - | http://www.ejmanager.com/mnstemps/36/36-1392458844.pdf?t=1392659040 | PREDICTION OF BINDING ENERGIES/INTERACTIONS BETWEEN DIOSPYRIN AND DIFFERENT TARGET PROTEINS OF Mycobacterium tuberculosis BY IN SILICO MOLECULAR DOCKING STUDIES | 2014 | AJ Suresh, R Devi, KM Noorulla - Indo American Journal of Pharmaceutical Research, 2014 - ejmanager.com | ... Protein Data Bank (PDB) ID were selected, NADH-dependent enoyl- ACP reductase (InhA) - 2NSD, Adenosine kinase (Adok) - 2PKK, Mycolic acid synthase (PcaA) - 1L1E, Lysine N- acetyltransferase (MbtK) - 1YK3, Thymidylate synthase X (ThyX) - 3GWC, Thymidylate kinase ... |
| 5 | 4iuj | - | https://www.nature.com/articles/s41589-024-01813-z | PROTAR Vaccine 2.0 generates influenza vaccines by degrading multiple viral proteins | 2025 | C Zhang, J Hou, Z Li, Q Shen, H Bai, L Chen- Nature Chemical, 2025 - nature.com | Data Bank ( PDB ) under accession numbers 4WSB, 4WSB, 4IUJ , 2IQH, 7JM3 and 4OPH, respectively. The 3D structure of influenza B viral PA protein was deposited to the PDB under |
| 6 | 3gwc | 4f4a, 4fkx, 4emd | http://14.139.186.108/jspui/handle/123456789/31568 | PROTEIN-LIGAND INTERACTIONS AND STRUCTURE-BASED INHIBITOR DISCOVERY | 2018 | S Usha, S Selvaraj - 2018 - 14.139.186.108 | i) Target structure A target structure experimentally determined through X-ray crystallography or NMR spectroscopy techniques and deposited in the PDB is the ideal starting point for docking. Structural genomics has accelerated the rate at which target structures are |
| 7 | 4tyz | - | https://repository.arizona.edu/handle/10150/630376 | PROTEIN-PROTEIN INTERACTIONS OF HUMAN PARVOVIRUS B19 NS1 AND IDENTIFICATION OF THE NS1 TRANSCRIPTIONAL TRANSACTIVATION DOMAIN | 2018 | AL Morano - 2018 - repository.arizona.edu | Page 1. PROTEIN-PROTEIN INTERACTIONS OF HUMAN PARVOVIRUS B19 NS1 AND IDENTIFICATION OF THE NS1 TRANSCRIPTIONAL TRANSACTIVATION DOMAIN Structure: Residues 112-214 share 32% sequence identity to x-ray crysal structure in PDB file 4TYZ chain A (a protein of unknown function). |
| 8 | 4nbr | - | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.0c01343 | PSIQUE: Protein Secondary Structure Identification on the Basis of Quaternions and Electronic Structure Calculations | 2021 | F Adasme-Carreno, J Caballero- Journal of Chemical, 2021 - ACS Publications | Inf. Model. 2021, 61, 4, 1789-1800. ADVERTISEMENT. RETURN TO ISSUEPREVComputational Chemis...Computational ChemistryNEXT. Journal Logo. PSIQUE: Protein Secondary Structure Identification on the Basis of Quaternions and Electronic Structure Calculations |
| 9 | 3ek2 | - | http://www.mdpi.com/1422-0067/15/2/2672/pdf | Paclitaxel Induces Apoptosis in Breast Cancer Cells through Different Calcium-Regulating Mechanisms Depending on External Calcium Conditions | 2014 | Z Pan, A Avila, L Gollahon - International journal of molecular sciences, 2014 - mdpi.com | ... 3 2i6x ?10.3 Porphyromonas gingivalis hydrolase 4 3ek2 ?10.3 Burkholderia pseudomallei eonyl reductase ... Two libraries, ?pdb_subset.py? and ?pdb_centermass.py? from the pdb-tools project (https://code.google.com/p/pdb-tools/) were modified and used in Artemis. ... |
| 10 | 4h3e | - | https://www.mdpi.com/2076-3921/9/11/1047 | Parallel Molecular Evolution of Catalases and Superoxide DismutasesFocus on Thermophilic Fungal Genomes | 2020 | K Chovanov, M Bhmer, A Poljovka, J Budi- Antioxidants, 2020 - mdpi.com | and heme catalases were obtained from Phyre-2 server [16] by employing the intensive mode with HMM and PSI-Blast for finding closest homologs with a known experimental structure . Obtained structural models were superimposed on experimental 3D structures using the |