We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8D2Z | 2023 | 0 |
| 8D57 | 2022 | 0 |
| 7TXX | 2022 | 0 |
| 8DF5 | 2022 | 0 |
| 7TWZ | 2022 | 0 |
| 4POB | 2014 | 0 |
| 4PPW | 2014 | 0 |
| 8DGD | 2023 | 0 |
| 8DIM | 2022 | 0 |
| 7TOT | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5bt8 | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.200302 | Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea | 2020 | M Rojas-Pirela, D Andrade-Alvirez- Open, 2020 - royalsocietypublishing.org | bacteria, PGK, monomer, open, , 6I06, [39]. Acinetobacter baumannii, bacteria, PGK, monomer, , , 5BT8 , Fairman et al. (NA) Figure 3. Three-dimensional structure of phosphoglycerate kinase. (a) Ribbon representation of the overall structure of pig muscle PGK ( PDB : 1HDI) |
| 2 | 5ts2 | 3pxu | https://www.sciencedirect.com/science/article/pii/S1570963920302132 | Phosphopantetheine Adenylyltransferase: A promising drug target to combat antibiotic resistance | 2020 | A Gupta, P Sharma, TP Singh, S Sharma- Biochimica et Biophysica Acta, 2020 - Elsevier | Although, the DPCK domain of the human fusion protein shows high sequence and structural homology to bacterial DPCK The PDB IDs of the structure , percentage sequence identities and rms deviations for the C atoms are also indicated ... The structures of complexes of PPAT with dPCoA from several bacterial species have been determined so far and include EcPPAT (PDB ID: 1B6T), MtPPAT (PDB ID: 3RBA), BpPPAT (PDB ID: 3PXU), MaPPAT (PDB ID: 5O08), PaPPAT (PDB ID: 5TS2) and AbPPAT (PDB ID: 5ZZC |
| 3 | 3dah | - | https://journals.asm.org/doi/abs/10.1128/MMBR.00040-16 | Phosphoribosyl diphosphate (PRPP): biosynthesis, enzymology, utilization, and metabolic significance | 2017 | B Hove-Jensen, KR Andersen, M Kilstrup- Microbiology and, 2017 - Am Soc Microbiol | been crystallized, and high-resolution structures have been determined (4952). A three-dimensional structure has been determined also for the PRPP synthase from the Gram-negative bacterium Burkholderia (Pseudomonas) pseudomallei strain 1710b ( PDB code 3dah ) (53 |
| 4 | 3rqi | - | http://dx.plos.org/10.1371/journal.pone.0024173 | Phosphorylation alters the interaction of the Arabidopsis phosphotransfer protein AHP1 with its sensor kinase ETR1 | 2011 | B Scharein, G Groth - PloS one, 2011 - dx.plos.org | ... form. A homology model of AHP1 built on the crystal structure of the Hpt protein OsHP1 from rice (PDB code 1YVI) which is shown in Figure 5 further supports our experimental data that AHP1 forms homodimers in solution. The ... |
| 5 | 3o2e | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.15447 | Phosphorylation status of BolA affects its role in transcription and biofilm development | 2021 | L Galego, S Barahona, CV Romo- The FEBS, 2021 - Wiley Online Library | NMR structure of mouse BolA1 ( PDB ID 1V60) and E. coli BolA ( PDB ID 2DHM) reveal a structure with similarity to nucleic acid binding proteins including a helix-turn [6]. MreB is a structural homologue of actin that is essential for cell elongation, maintenance of |
| 6 | 5idv | - | https://scripts.iucr.org/cgi-bin/paper?mf5027 | Photocage-initiated time-resolved solution X-ray scattering investigation of protein dimerization | 2018 | I Josts, S Niebling, Y Gao, M Levantino, H Tidow- IUCrJ, 2018 - scripts.iucr.org | A total of 30 independent DAMMIF (Franke & Svergun, 2009) runs were performed to generate the initial structure pool (fit not shown). Calculated difference curves between the crystallographic dimer and monomer ( PDB codes 3b60 and 5idv ) show features similar to |
| 7 | 6q05 | - | https://www.sciencedirect.com/science/article/pii/S0022283620302874 | Phylogenetic analysis and structural modeling of SARS-CoV-2 spike protein reveals an evolutionary distinct and proteolytically sensitive activation loop | 2020 | JA Jaimes, NM Andr, JS Chappie, JK Millet- Journal of molecular, 2020 - Elsevier | Volume 432, Issue 10, 1 May 2020, Pages 3309-3325. Journal home page for Journal of Molecular Biology. Phylogenetic Analysis and Structural Modeling of SARS-CoV-2 Spike Protein Reveals an Evolutionary Distinct and Proteolytically Sensitive Activation Loop |
| 8 | 3h7f | - | http://mmbr.asm.org/content/76/1/66.short | Phylogenetic framework and molecular signatures for the main clades of the phylum actinobacteria | 2012 | B Gao, RS Gupta - Microbiology and Molecular Biology Reviews, 2012 - Am Soc Microbiol | ...Structures of the S-adenosyl-l-homocysteine hydrolase (PDB accession number 3CE6) (240) (A and B) and serine hydroxymethyltransferase (PDB accession number 3H7F) (C and D) proteins from M. tuberculosis showing the locations in protein structures of the 9-aa and 5-aa actinobacterium-specific inserts that are found in these proteins... |
| 9 | 4ni5 | 4weo, 5jy1 | https://biotechnologyforbiofuels.biomedcentral.com/articles/10.1186/s13068-020-0... | Phylogenetics-based identification and characterization of a superior 2, 3-butanediol dehydrogenase for Zymomonas mobilis expression | 2020 | V Subramanian, VV Lunin- Biotechnology, 2020 - biotechnologyforbiofuels | Zymomonas mobilis has recently been shown to be capable of producing the valuable platform biochemical, 2,3-butanediol (2,3-BDO). Despite this capability, the production of high titers of 2,3-BDO is restricted by several physiological parameters. ... The initial model was built based on PDB entry 4ni5 with FFAS03 search and ProtMod modeling servers [50,51,52] using the SCWRL method. |
| 10 | 2lbb | 2l4b | https://arxiv.org/abs/1901.00991 | Physical Folding Codes for Proteins | 2019 | X Ma, C Hou, L Shi, L Li, J Li, L Ye, L Yang- arXiv preprint arXiv, 2019 - arxiv.org | 15 Soares, CM, Teixeira, VH & Baptista, AM Protein Structure and Dynamics in Nonaqueous Solvents: Insights from Nature Structural Biology 10, 980, doi:10.1038/nsb1203-980 (2003 JL The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data |