We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8D2Z | 2023 | 0 |
| 8D57 | 2022 | 0 |
| 7TXX | 2022 | 0 |
| 8DF5 | 2022 | 0 |
| 7TWZ | 2022 | 0 |
| 4POB | 2014 | 0 |
| 4PPW | 2014 | 0 |
| 8DGD | 2023 | 0 |
| 8DIM | 2022 | 0 |
| 7TOT | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3qhx | - | https://www.biorxiv.org/content/10.1101/651067v1.abstract | SolXplain: An Explainable Sequence-Based Protein Solubility Predictor | 2019 | R Mall- bioRxiv, 2019 - biorxiv.org | be used as a scoring function to measure the quality of a tree structure Ht at in [13], devise a fast, greedy and iterative algorithm to identify these optimal tree structures We train our XGBoost classifier on top of physio-chemical (global), sequence and structural features extracted |
| 2 | 6c5v | - | https://books.google.com/books?hl=en&lr=&id=32CqDwAAQBAJ&oi=fnd&pg=PA313&dq=%226... | Gammaherpesvirus entry and fusion: A tale how two human pathogenic viruses enter their host cells | 2019 | BS Mhl, J Chen, R Longnecker- Adv. Virus Res, 2019 - books.google.com | 323 Gammaherpesvirus entry and fusion (Waterhouse et al., 2018) based on the crystal structures of EBV gB ( PDB ID: 3FVC), gH ( 6C5V ) and gL The structural sequence alignment of EBV and KSHV gB based on the crystal structure of EBV gB (3FVC)(Backovic et al., 2009 |
| 3 | 3r1i | - | http://www.jbc.org/content/early/2019/06/17/jbc.RA119.009390.short | Structural and biochemical characterization of 20-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32 | 2019 | HL Doden, RM Pollet, SM Mythen, Z Wawrzak- Journal of Biological, 2019 - ASBMB | replacement with the structure of an SDR from Mycobacterium marinum ( PDB : 3R1I ) and refined indicate these alanine substitutions did not sig- nificantly affect secondary structural elements (Fig extended N-terminus is important for second- ary and quaternary structure In both |
| 4 | 4f2n | - | https://scripts.iucr.org/cgi-bin/paper?or5020 | Crystal structure of an iron superoxide dismutase from the pathogenic amoeba Acanthamoeba castellanii | 2019 | O Dao, K Asaithambi, BK Na, KH Lee- Section F: Structural Biology, 2019 - scripts.iucr.org | et al., 2014), P. falciparum ( PDB entry 2bpi; Boucher et al., 2006) and L. major ( PDB entry 4f2n ; Phan et al., 2015) and of MnSOD from Homo sapiens ( PDB entry 5vf9 architecture of AcFeSOD is similar to those of other Fe/MnSODs, including the E. coli FeSOD structure (Fig |
| 5 | 5cy4 | - | https://www.nature.com/articles/s41598-019-39641-0 | Structural basis of small RNA hydrolysis by oligoribonuclease (Cps ORN) from Colwellia psychrerythraea strain 34H | 2019 | CW Lee, SH Park, CS Jeong, SS Cha, H Park- Scientific reports, 2019 - nature.com | Structure alignment search using DALI server showed that CpsORN exhibited high structural similarity with ORN HinORN; PDB code 1J9A), and Acinetobacter baumannii (AbaORN; PDB code 5CY4 ), and XC847 from Xanthomonas campestris (XcaORN; PDB code 2GBZ |
| 6 | 5cy4 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/2211-5463.12720 | Characterization of an intertidal zone metagenome oligoribonuclease and the role of the intermolecular disulfide bond for homodimer formation and nuclease activity | 2019 | Y Piotrowski, K Berg, DP Klebl, I Leiros- FEBS open, 2019 - Wiley Online Library | campestris, PDB 1J9A: Haemophilus influenzae, PDB 2IGI: E. coli, PDB 3TR8: Coxiella burnetii, PDB 5CY4 : Acinetobacter baumannii) In the X. campestris Orn structure ( PDB 2GBZ) it is shown that Orn forms a dimer in the crystal From the structural analysis it was shown that |
| 7 | 2n6t | 2n6x, 2n6w, 2n6s | https://www.biorxiv.org/content/10.1101/554931v1.abstract | Conditional Prediction of RNA Secondary Structure Using NMR Chemical Shifts | 2019 | K Zhang, AT Frank- bioRxiv, 2019 - biorxiv.org | chemical shifts were downloaded from the Protein Data Bank ( PDB : http://www. pdb .org) and native NMR-derived structure and the comparison structure is the CS-Folding generated structure 2JYM 2L5Z 2LK3 2MIS 2QH2 1Z2J 1JO7 5UZT 2N3Q 5IEM 2L3E 2N6T 2LPS 2N6S |
| 8 | 4npc | - | https://www.ingentaconnect.com/contentone/govi/pharmaz/2019/00000074/00000002/ar... | Synthesis and antibacterial activity of novel icariin derivatives | 2019 | A Wang, Y Xu- Die Pharmazie-An International Journal of, 2019 - ingentaconnect.com | The X-ray structure of MetAP1 ( PDB : 4npc ) was also obtained from Protein Databank ( PDB ). Before going to the docking procedure, the protein structure was prepared using the Protein preparation wizard of the DS 2017 R2 |
| 9 | 5cy4 | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2019.1643786 | Structural and dynamic studies provide insights into specificity and allosteric regulation of ribonuclease as, a key enzyme in mycobacterial virulence | 2019 | L Calvanese, F Squeglia, M Romano- Structure and, 2019 - Taylor & Francis | Despite this, its structure , a dimeric molecule with each monomer adopting a compact entry 4OKE) from Mycobacterium tuberculosis against the Protein Data Bank ( PDB ) using the Coxiella burnetii (Coxbu) (3TR8, Z-score 13.8), Acinetobacter baumannii (Aciba) ( 5CY4 , Z-score |
| 10 | 3hhj | 4dyw | http://repositorio.udec.cl/handle/11594/1006 | Asociacin de genes nudA y htrA de Helicobacter pylori con severidad de patologas gstricas, estudio bioinformtico de la protena NudA. | 2019 | PA Lincoir Campos - 2019 - repositorio.udec.cl | Page 1. Universidad de Concepcin Direccin de Postgrado Facultad de Ciencias Biolgicas - Programa de Magister en Ciencias con Mencin en Microbiologa Asociacin de genes nudA y htrA de Helicobacter pylori con severidad de patologas gstricas |