We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4ZBG | 2015 | 1 |
| 4Z9N | 2015 | 3 |
| 4Z0T | 2015 | 0 |
| 4Z04 | 2015 | 1 |
| 4YWN | 2015 | 0 |
| 4YWJ | 2015 | 7 |
| 4YWE | 2015 | 1 |
| 4YS8 | 2015 | 4 |
| 4YK1 | 2016 | 6 |
| 4YET | 2015 | 8 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3rih | - | https://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/200458/5/dnogk02134... | Studies on Structure-Function Relationship and Conversion of Coenzyme Requirement in Bacterial -Keto Acid Reductases Responsible for Metabolism of | 2015 | R Takase - 2015 - repository.kulib.kyoto-u.ac.jp | ... Data Page 5. 2 Bank ( PDB ) (www.wwpdb.org/) (40), in proportion to the progress in the field of structural biology. Structure -based biotechnology is expected to become an important part of post- structural biology. For ... |
| 2 | 3rih | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0176141 | Functional genetic variant of WW domain-containing oxidoreductase (WWOX) gene is associated with hepatocellular carcinoma risk | 2017 | HL Lee, HL Cheng, YF Liu, MC Chou, SF Yang - PloS one, 2017 - journals.plos.org | ... Strick consensus amino acids in the putative active centers of compact structural units are shown: the key amino acids of active ... of human WWOX using the SWISSMODEL server based on M. abscessus short chain dehydrogenase or reductase crystal structure ( PDB ID: 3RIH ). ... |
| 3 | 3rih | 3uve | https://cyberleninka.ru/article/n/rol-zaryazhennyh-ostatkov-v-strukturnoy-adapta... | The Role of Charged Residues in the Structural Adaptation of Short-Chain Alcohol Dehydrogenase (SDR) from Thermophilic Organisms to High Temperatures | 2018 | Bulletin of Moscow University. Series 2. Chemistry, 2018 - cyberleninka.ru | PDB (*), 3RIH (Mycobacterium Abscessus*) 2,36 2,36 1,32 7,62 8 THE ROLE OF CHARGED RESIDUES IN THE STRUCTURAL ADAPTATION OF SHORT-CHAIN |
| 4 | 3rih | 3uve | https://link.springer.com/article/10.3103/S0027131418050085 | The Role of Charged Residues in the Structural Adaptation of Short-Chain Alcohol Dehydrogenase (SDR) from Thermophilic Organisms to High Temperatures | 2018 | AV Popinako, MY Antonov, EY Bezsudnova- Moscow University, 2018 - Springer | Protein structures from PDB database are marked with asterisk 3RIH (Mycobacterium Abscessus tion involving specific patterns of the distribution of dif- ferent residues in the structure , including their distribu- tion on the solvent-accessible molecular surface and in the protein core |
| 5 | 3rd7 | 3u0a | http://journals.iucr.org/d/issues/2015/04/00/mn5084/stdsup.html | Structural and functional characterization of TesB from Yersinia pestis reveals a unique octameric arrangement of hotdog domains | 2015 | CMD Swarbrick, ME Perugini, N Cowieson… - Biological …, 2015 - journals.iucr.org | ... marinum; however, a further two structures have been solved and annotated as TesB thioesterasesfrom M. avium (PDB entries 3rd7 and 4r9z ... Thus, much of the current understanding regarding thisclass of thioesterases been built on the E. coli structure, with the other ... |
| 6 | 3rd7 | 3u0a | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b01049 | Mycobacteria encode active and inactive classes of TesB fatty-acyl CoA thioesterases revealed through structural and functional analysis | 2017 | CMD Swarbrick, GV Bythrow, DG Arago - Biochemistry, 2017 - ACS Publications | ... Our structural homology analysis revealed that at least one other TesB acyl-CoA thioesterasealso contains an Ala residue at the active site, while two other ... The TesB thioesterase from M. avium (MaTesB) is a 276-amino acid protein and shares a low level of sequence similarity with the homologous TesB thioesterases from ... the orthologous TesB thioesterase from M. avium (PDB entry 3RD7, 41%).. ... |
| 7 | 3rd5 | - | http://www.jbc.org/content/290/52/30728.short | Pleiotropic Functions of Tumor Suppressor WWOX in Normal and Cancer Cells | 2015 | M Abu-Remaileh, E Joy-Dodson - Journal of Biological , 2015 - ASBMB | ... B, a structural model of the SDR region (generated by the RosettaCM protocol as implemented by the Robetta server (78), starting from PDB ID 3rd5 (58) as a template structure) shows an extended central β sheet formed by Rossmann folds. ... |
| 8 | 3rd5 | - | https://www.mdpi.com/2073-4352/9/10/533 | Trial Direct Phasing Calculation of A Thyroid Hormone Receptor Alpha Structure (4LNW) | 2019 | M Jiang, H He, WP Su- Crystals, 2019 - mdpi.com | It is worth mentioning that 3RD5 is a test structure with the lowest solvent content that we have successfully applied the direct method to. 4. Methodology After locating the two ligands, MJ and HH were informed that the test structure has the PDB code 4LNW |
| 9 | 3rd5 | - | https://link.springer.com/article/10.1007/s42535-020-00140-7 | In silico structural analysis and ligand-binding predictions of a few developmental stage specific-proteins during in vitro morphogenesis in Vanilla | 2020 | M Sultana, G Gangopadhyay- Vegetos, 2020 - Springer | The crystal structure of anoxidoreductase protein (a putative uncharacterized protein from Mycobacterium paratuberculosis, PDB ID- 3RD5 ) was used as a template to predict the three dimensional model (Fig. 5e) of it. The predicted docking model (Fig |
| 10 | 3rd5 | - | http://www.sciencedirect.com/science/article/pii/S1011134416302433 | Multiple active site residues are important for photochemical efficiency in the light-activated enzyme protochlorophyllide oxidoreductase (POR) | 2016 | BRK Menon, SJO Hardman, NS Scrutton - of Photochemistry and , 2016 - Elsevier | ... A putative uncharacterized SDR protein (PDB id: 3RD5) that has the highest sequence identitywith POR was used as the reference structure and the sieving procedure removed 68% of the3RD5 residues at 1.8 sieving level using Mustang-MR sieving server. ... |