We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5F9Z | 2016 | 1 |
| 5HA5 | 2016 | 1 |
| 5HX9 | 2016 | 1 |
| 5U2I | 2017 | 1 |
| 6B9U | 2017 | 1 |
| 6C0E | 2018 | 1 |
| 6N0U | 2018 | 1 |
| 6OZD | 2019 | 1 |
| 3R9Q | 2011 | 1 |
| 7L6P | 2021 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6mc0 | - | https://www.mdpi.com/864810 | High-Resolution Crystal Structure of Chloroplastic Ribose-5-Phosphate Isomerase from Chlamydomonas reinhardtiiAn Enzyme Involved in the Photosynthetic | 2020 | T Le Moigne, P Crozet, SD Lemaire, J Henri- International journal of, 2020 - mdpi.com | 4A). Structural superposition of CrRPI1 with RpiA from Legionella pneumophila (LpRPI, PDB : 6MC0 , RMSD = 0.734 We describe the first structure of a ribose-5-phosphate isomerase from a Viridiplanta The structural fold of CrRPI1 (Figure 1B) is similar to previously described |
| 2 | 4yk1 | - | http://www.superfri.org/superfri/article/view/171 | High performance computing with coarse grained model of biological macromolecules | 2018 | EA Lubecka, AK Sieradzan, C Czaplewski- Supercomputing, 2018 - superfri.org | The source code in the UNRES package with Fortran 90 has the following directory structure : unres (main program modules, source NucB (110 residues, single chain, PDB code: 5OMT), BID domain of Bep6 (137 residues, single chain, PDB code: 4YK1 ), CDI complex |
| 3 | 3eiz | 3i4t | http://www.turkjbiochem.com/2014/435-442.Ek2.pdf | High pKa variability of cysteine residues in structural databases and the effect of H-bond contributions | 2014 | SM Marino, İ Soylu - Türk Biyokimya Dergisi [Turkish Journal of …, 2014 - turkjbiochem.com | ... High pKa variability of cysteine residues in structural ... RESULTS of ppka3 on PDB-crystal datasetprot=protein name res_num=residue number H-bond=hydrogen bond contribution to pKaprediction (pKa) Coul=electrostatics (from Coulombic interactions) contribution to pKa ... |
| 4 | 4dlp | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5405087/ | High Throughput Virtual Screening to Identify Novel natural product Inhibitors for MethionyltRNA-Synthetase of Brucella melitensis | 2017 | M Kumari, S Chandra, N Tiwari, N Subbarao - Bioinformation, 2017 - ncbi.nlm.nih.gov | ... IV, and Methionine analogus dataset respectively. The crystal structure of MetRsBm(4DLP) was obtained from protein data bank (http://www.rcsb.org/pdb/explore.do?structureId=4DLP). The protein was prepared by removing ... |
| 5 | 3p96 | - | http://www.jbc.org/content/289/36/25149.short | High Throughput Screen Identifies Small Molecule Inhibitors Specific for Mycobacterium tuberculosis Phosphoserine Phosphatase | 2014 | G Arora, P Tiwari, RS Mandal, A Gupta - Journal of Biological Chemistry, 2014 - ASBMB | ... not available. The closest homolog for SerB2 protein was SerB protein from Mycobacterium avium (Protein Data Bank code 3P96) with 84% sequence identity, 99% query coverage, and an E value of 0.0. The superimpositions ... |
| 6 | 3d64 | - | http://pubs.acs.org/doi/abs/10.1021/jp3014332 | Hidden Relationship between Conserved Residues and Locally Conserved Phosphate-Binding Structures in NAD (P)-Binding Proteins | 2012 | CY Wu, YH Hwa, YC Chen, C Lim - The Journal of Physical Chemistry, 2012 - ACS Publications | ... Bank (PDB).2 In the absence of structural data, sequence similarity search tools are useful in annotating protein function and in aiding the design of experiments for further studies. ... the NAD(P)-binding domains in the current PDB. ... |
| 7 | 5vm1 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/jobm.201800482 | Heterologous expression and biochemical characterization of a thermostable xylulose kinase from Bacillus coagulans IPE22 | 2019 | Y Zhang, C Zhao, Z Ni, M Shao, M Han- Journal of basic, 2019 - Wiley Online Library | was shown in Figure 1. In the 3D structure modeling analysis, Bc-XK showed the highest sequence identity of 35% with the homologue from Brucella ovis ATCC 25840 ( PDB accession number 5VM1 , DOI: 10.2210/pdb5VM1/ pdb ), the confi- dence and structure coverage values |
| 8 | 3i0p | - | http://www.sciencedirect.com/science/article/pii/S0022519310001013 | Helix?helix interactions and their impact on protein motifs and assemblies | 2010 | N Kurochkina - Journal of Theoretical Biology, 2010 - Elsevier | ... Protein, Source, PDB designation. Four-?-helix bundle, Myohemerythrin, Thermiste zostericola, 2 mhr. Hemerythrin, Thermiste discrita, 2hmq. ... Aeropyrum pernix, 2d4a. Entamoeba hystolitica,3i0p. Uridine-diphosphate-galactose 4-epimerase, Trypanosoma brucei, 1gy8. ... |
| 9 | 5tw7 | - | https://www.biorxiv.org/content/10.1101/808618v2.full-text | Helices on interdomain interface couple catalysis in the ATPPase domain with allostery in Plasmodium falciparum GMP synthetase | 2020 | S Shivakumaraswamy, N Pandey, L Ballut, S Violot- bioRxiv, 2020 - biorxiv.org | Experimental Procedures. Sequence and structure analysis The PDB IDs of the structures of GMPS analyzed are 1GPM (Escherichia coli), 3TQI (Coxiella burnetii), 2YWB and 2YWC (Thermus thermophilus), 5TW7 (Neisseria gonorrhoeae), 2VXO (Homo sapiens), 3UOW |
| 10 | 3sdo | - | http://www.sciencedirect.com/science/article/pii/S157096391300037X | Halogen bonding at the ATP binding site of protein kinases: Preferred geometry and topology of ligand binding | 2013 | J Pozna?ski, D Shugar - Biochimica et Biophysica Acta (BBA)-Proteins and ?, 2013 - Elsevier | ... bonding mode occurs to the p-loop region (Arg43-Phe54 in CK2?) in 1 J91, 1ZLT, 2GU8, 2UW8, 2X6D 3NGA 3SDO, frequently accompanying ... Thus, the side-chain carboxyl of Asp (PDB IDs: 1ZOH, 3KXG, 1Q4L, 1FVT, 1UV5, 3ZZ2), a backbone carbonyl of Gly (PDB IDs: 2XP2 ... |