We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TN0 | 2022 | 0 |
| 7TMV | 2022 | 0 |
| 8DIS | 2023 | 0 |
| 8DIU | 2022 | 0 |
| 7TMG | 2022 | 0 |
| 8DOF | 2022 | 0 |
| 8DOP | 2022 | 0 |
| 4U83 | 2014 | 0 |
| 7TMF | 2022 | 0 |
| 4W9U | 2014 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3d53 | 3oc6 | http://pubs.rsc.org/en/content/articlehtml/2015/sc/c5sc01065a | Enzyme repurposing of a hydrolase as an emergent peroxidase upon metal binding | 2015 | N Fujieda, J Schätti, E Stuttfeld, K Ohkubo, T Maier… - Chemical …, 2015 - pubs.rsc.org | ... These wild-type proteins or their single mutant isoforms (pdb code: 3D53, 2F99, 1JSY, 1FHI(bearing a Q83E mutation), 1MEJ ... yellow sticks); (B) close-up view of the Cu1 binding site inCu·6-PGLac (PDB code 4TM7 ... The X-ray structure was refined to a resolution of 1.39 Å (Fig. ... |
| 2 | 6x79 | - | https://pubs.acs.org/doi/abs/10.1021/acsomega.0c03512 | Characterization of the SARS-CoV-2 S protein: biophysical, biochemical, structural, and antigenic analysis | 2020 | NG Herrera, NC Morano, A Celikgil, GI Georgiev- ACS, 2020 - ACS Publications | need to produce large quantities of high-quality SARS-CoV-2 Spike (S) protein for use in both clinical and basic science settings. To address this need, we have evaluated the expression and purification of two previously reported S protein constructs in Expi293F and ExpiCHO-S cells... In nine structures that align well in this region (conformation 1: 6VXX, 6X29, 6X2C, 6X79, 6ZOX, 6ZOY, 6ZP0, 6ZP1, 6ZWV), the amino acid segment 621–640 was not modeled, presumably due to disorder |
| 3 | 4iuj | - | http://www.nature.com/nature/journal/v527/n7576/abs/nature15525.html | Crystal structure of the RNA-dependent RNA polymerase from influenza C virus | 2015 | N Hengrung, K El Omari, IS Martin, FT Vreede - Nature, 2015 - nature.com | ... he published fragments of FluPolA (PDB accessions 4IUJ, 4AWH, 4CB4, 3A1G and 2VY7) were fitted by eye using Coot, which was used for all model building. ... |
| 4 | 3pgz | - | http://dx.plos.org/10.1371/journal.pone.0041894 | Crystal Structure of a Monomeric Thiolase-Like Protein Type 1 (TLP1) from Mycobacterium smegmatis | 2012 | N Janardan, RK Harijan, RK Wierenga, MRN Murthy - PloS one, 2012 - dx.plos.org | ... DALI search using this domain against the PDB shows structural similarities to a molybdenum binding protein (PDB id: 1H9K) [20] and a single strand DNA binding protein (PDB id: 3PGZ) (Seattle Structural Genomics Center for Infectious Disease; Unpublished). ... |
| 5 | 5bnt | - | https://scripts.iucr.org/cgi-bin/paper?dp5109 | Structure of aspartate -semialdehyde dehydrogenase from Francisella tularensis | 2018 | NJ Mank, S Pote, KA Majorek, AK Arnette- Section F: Structural, 2018 - scripts.iucr.org | entry 3pzr; Pavlovsky et al., 2012), Pseudomonas aeruginosa ( PDB entry 5bnt ; Seattle Structural N-acetyl- -glutamyl-phosphate reductases (ArgCs), including proteins with known structure : ArgCs from entry 2i3a; Cherney et al., 2007), Salmonella typhi- murium ( PDB entry 2g17 |
| 6 | 5bnt | - | https://onlinelibrary.wiley.com/doi/abs/10.1107/S2053230X17017241 | Structure of aspartate semialdehyde dehydrogenase from Francisella tularensis | 2018 | NJ Mank, S Pote, KA Majorek- Section F: Structural, 2018 - Wiley Online Library | NADP+ (yellow spheres) is modeled using the structure of H. influenzae ASADH ( PDB PDB entry 3pzr; Pavlovsky et al., 2012), Pseudomonas aeruginosa ( PDB entry 5bnt ; Seattle Structural entry 1t4b; Nichols et al., 2004) and Haemophilus influenzae (HiASADH; PDB entry 1pqu |
| 7 | 4g50 | 3uqb | https://pubs.acs.org/doi/abs/10.1021/acs.jmedchem.0c00911 | Targeting Protein Folding: A Novel Approach for the Treatment of Pathogenic Bacteria | 2020 | NJ Scheuplein, NM Bzdyl, EA Kibble- Journal of Medicinal, 2020 - ACS Publications | Infectious diseases are a major cause of morbidity and mortality worldwide, exacerbated by increasing antibiotic resistance in many bacterial species. The development of drugs with new modes of act... |
| 8 | 5dld | - | https://scripts.iucr.org/cgi-bin/paper?ir5017 | Structural characterization of a nonhydrolyzing UDP-GlcNAc 2-epimerase from Neisseria meningitidis serogroup A | 2020 | NK Hurlburt, J Guan, H Ong, H Yu, X Chen- Section F: Structural, 2020 - scripts.iucr.org | The 9 9 loop in NmSacA also contains a 310-helix, which is not observed in the E. coli structure . The structures of other epimerases with ligands bound in the active site, including those from Burkholderia vietnam- iensis ( PDB entry 5dld ; 48.7% identity; Seattle Structural |
| 9 | 7m53 | - | https://www.nature.com/articles/s42003-022-03262-7 | Structural definition of a pan-sarbecovirus neutralizing epitope on the spike S2 subunit | 2022 | NK Hurlburt, LJ Homad, I Sinha, MF Jennewein- Communications, 2022 - nature.com | a Structural alignment of stem helix peptides to CV3-25 Fab and B6 Fab (PDBid: 7M53 ) shown The CV3-25/peptide structure has been deposited in the PDB (7RAQ). The negative stain |
| 10 | 4zju | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/cbdd.13686 | Ternary complex formation of AFN1252 with Acinetobacter baumannii FabI and NADH: Crystallographic and biochemical studies | 2020 | NK Rao, V Nataraj, M Ravi- Chemical Biology &, 2020 - Wiley Online Library | 6AHE) with the NAD bound AbFabI ( PDB :4JZU) (243 C atoms; PDB ; 4ZJU ),showed an rms Structural superposition revealed no major conformational changes except in The crystal structure of AbFabI in the ternary complex is similar to the reported structures of EcFabI |