We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3L3B | 2010 | 1 |
| 6UM4 | 2019 | 1 |
| 5VJY | 2017 | 1 |
| 7UME | 2022 | 0 |
| 7US6 | 2022 | 0 |
| 7US9 | 2022 | 0 |
| 7U0U | 2022 | 0 |
| 7U0T | 2022 | 0 |
| 7USB | 2022 | 0 |
| 7U0S | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ily | - | https://www.ingentaconnect.com/contentone/ben/cpd/2018/00000024/00000014/art0001... | Virtual Screening Studies for Discovery of Novel Inhibitors of Inflammatory Process Targets | 2018 | MT Scotti, MF Alves- Current, 2018 - ingentaconnect.com | The structure -based pharmacophore models were produced with several inhibitor complexes (3PDC, 31 3ANS, 27 3ANT, 3OTQ, 3KOO, 3ILY , 3I28, 1ZD5 and 1VJ540) from the PDB databank (https://www.rcsb.org/ pdb /) [139-144] |
| 2 | 3tcq | - | http://www.mdpi.com/1422-0067/17/11/1748/htm | Integrated Computational Approach for Virtual Hit Identification against Ebola Viral Proteins VP35 and VP40 | 2016 | MU Mirza, N Ikram - International Journal of Molecular Sciences, 2016 - mdpi.com | ... We have identified VP40 assemblies in a filamentous structure and have shown that disruption of these structures halts viral egress... The homology-based search inferred that the 3D coordinate crystal structure of the Reston Ebola virus RNA binding domain (PDB ID: 3KS4), in addition to the crystal structure of the Sudan Ebola virus matrix protein VP40 (PDB ID: 3TCQ), were the best hits based on query coverage ... |
| 3 | 3ek2 | - | https://opus.uni-wuerzburg.de/opus4-wuerzburg/files/7086/Thesis_MariaHirschbeck_... | Structure-based drug design on the enoyl-ACP reductases of Yersinia pestis and Burkholderia pseudomallei | 2012 | MW Hirschbeck - opus.uni-wuerzburg.de | ... In the PDB database an apo structure of BpFabI had already been deposited (PDB code 3EK2), which was crystallized in 10% PEG 6000 and 100 mM HEPES pH 7.0. ... |
| 4 | 3r1i | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3867646/ | Insilico Characterization and Homology Modeling of Arabitol Dehydrogenase (ArDH) from Candida albican | 2013 | MW Sarwar, IB Saleem, A Ali, F Abbas - Bioinformation, 2013 - ncbi.nlm.nih.gov | … used for multiple sequence alignment of ArDH with other dehydrogenases from Mycobacterium marinum (PDB Id: 3R1I), Candida parapsilosis ... |
| 5 | 3urr | - | https://journals.asm.org/doi/abs/10.1128/jb.00023-23 | All dacs in a row: domain architectures of bacterial and archaeal diadenylate cyclases | 2023 | MY Galperin- Journal of Bacteriology, 2023 - Am Soc Microbiol | The search of the AlphaFold-predicted structure of DACNG using Dali (90) does not show any closely related structures in the PDB . This domain can also be found in a stand-alone ... PTS_EIIA_2 PF00359 139 3URR |
| 6 | 3rd5 | - | http://search.proquest.com/openview/3456a0f162d24a094672122e01905158/1?pq-origsi... | Mechanistic Studies on the Light-Dependent NADPH: Protochlorophyllide Oxidoreductase and Animal Cryptochromes | 2018 | N Archipowa - 2018 - search.proquest.com | a C15-E-anti-configuration as shown in Figure 1.4A [8]. This is followed by formation. of several thermally activated intermediates comprising structural changes of the POR. Crystal structure of the NB-protein catalytic site ( PDB : 3AEK [32]). The |
| 7 | 6c87 | - | https://www.sciencedirect.com/science/article/pii/S1878818119318249 | In silico and in vitro comparison of nicotinamide adenine dinucleotide phosphate dependent xylose reductase rossmaan fold in Debaryomycetaceae yeast family | 2020 | N Arumugam, T Boobalan, S Saravanan- Biocatalysis and, 2020 - Elsevier | it is the Integrated examinations of protein structure assessment online tool ID, Organism, Aa length, Rossmann fold region, Range, Identified PDB template, Hydrogen 3, MH286916, M. caribbica, 359, DFIDVVIVGAGFTKAVAAALLGVPGAGFVAVYDG, 330359, 6C87 , L20, A17, V16 |
| 8 | 3h7f | - | https://link.springer.com/chapter/10.1007/978-3-030-18375-2_12 | Combinatorial Designing of Novel Lead Molecules Towards the Putative Drug Targets of Extreme Drug-Resistant Mycobacterium tuberculosis: A Future Insight for | 2019 | N Bachappanavar, S Skariyachan- Essentials of Bioinformatics, Volume II, 2019 - Springer | glyoxylate and dicarboxylate. The native structure of serine hydroxymethyltransferase ( PDB ID: 3H7F ) possessed two chains (A and B) with molecular weight of 95226.08 Da and a resolution of 1.5 (R-value free, 0.196) (Fig. 12.2a). Further |
| 9 | 4f3p | - | https://www.sciencedirect.com/science/article/pii/S0141813018328228 | Local structural motifs in proteins: Detection and characterization of fragments inserted in helices | 2018 | N Balasco, G Smaldone, A Ruggiero- International journal of, 2018 - Elsevier | insertion: A) the substrate binding proteins ( PDB IDs: 1GGG, 1HLS, 1IIT, 2IEE, 2YLN, 4EQ9, 4F3P , 4H5F, 4I62 in red, 3QFH in blue), and C) the elongation factors EF-1A/EF-Tu ( PDB IDs: 1EFC In particular, they could (a) present an irregular loop structure , (b) form -hairpins or |
| 10 | 3o0m | 3oj7, 3r6f, 3lb5 | https://udspace.udel.edu/items/40e2c554-f9dc-43a9-bb93-b6dd5914e73c | Potential Binding Partners of cADPR and cADPR isomers in the Thoeris Phage Defense System | 2023 | N Bomasamudram - 2023 - udspace.udel.edu | structures , and they differ based on their Cterminus. The structures of categorized Hint structures hydrocarbonoclasticus (3OHE), and Mycolicibacterium smegmatis ( 3O0M ). Type III Hint |