We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7LYD | 2021 | 1 |
| 7LYY | 2021 | 1 |
| 7M2D | 2021 | 1 |
| 7SL5 | 2022 | 1 |
| 7SSQ | 2023 | 1 |
| 7SWK | 2021 | 1 |
| 7SY9 | 2021 | 1 |
| 6XR5 | 2020 | 0 |
| 6X9F | 2020 | 0 |
| 9YMM | 2025 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3m1x | 3gp3 | https://pdfs.semanticscholar.org/b88b/677bceb020a7b157a866e774007d27e673e9.pdf | Expanding molecular modeling and design tools to non-natural sidechains. | 2012 | D Gfeller, O Michielin, V Zoete - J Comput Chem. 2012 Jul 5;33(18):1525-35. | Supplementary Figures 1JBO, 1KTP, 1PHN, 1QGW, 1XF6, 1XG0, 2BV8, 2C77, 2V8A, 2VJH, 2VJT, 3BRP, 3DBJ, 3O18, 3O2C |
| 2 | 5u9p | 3ftp | https://pdfs.semanticscholar.org/eba1/31d1aecdd33eafa513c4bec6c3ec37d01b5b.pdf | Electrical Supporting information | 2018 | F Sha, Y Zheng, J Chen, K Chen, F Cao, M Yan - pdfs.semanticscholar.org | Entry Enzyme GenBank accession no. Amino acid identities with PspPDH [%] Template PDB code TM- scorea Gbind [kcal mol-1] 23 PhpPDH WP_045028254 41.53 4z9y 0.90 -5.71 1.96 24 DfPDH WP_050774712 31.98 5u9p 0.90 -11.90 2.01 |
| 3 | 6vxx | 6vyb | https://periodicals.karazin.ua/biophysvisnyk/article/view/26227 | In silico analysis of binding sites for potential inhibitors targeting the complex of furin protease | 2025 | NV Khmil, AV Shestopalova- Biophysical, 2025 - periodicals.karazin.ua | structures of the S protein ( PDB IDs: 6VYB, 6VXX , 7VHJ) from the Protein Data Bank (www.rcsb.org ) were docked with furin protease ( PDB ID: onto 6VYB-5JXG, 6VXX -5JXG, and 7VHJ- |
| 4 | 6bfu | - | https://pmc.ncbi.nlm.nih.gov/articles/PMC11014491/ | Broadly neutralizing antibodies against emerging delta-coronaviruses | 2024 | M Rexhepaj, YJ Park, L Perruzza, D Asarnow- , 2024 - pmc.ncbi.nlm.nih.gov | E, Superimposition of the PD33-bound PDCoV RBD structure with the PDCoV S ectodomain trimer structure ( PDB 6BFU ) 35 showing that PD33 could not bind to a closed S trimer due |
| 5 | 7kna | - | https://pmc.ncbi.nlm.nih.gov/articles/PMC12265162/ | A single residue change only differing by an atomic group can drive imprinting to influenza | 2025 | J Sun, G Jo, CA Troxell, Y Fu, R Hoezl, H Lv- Research, 2025 - pmc.ncbi.nlm.nih.gov | For model building, the AlphaFold3-predicted model and the cryo-EM structure of Mich15 H1 ( PDB : 7KNA ) were used as the initial models for HK14 H3 and Mich15 H1, respectively. |
| 6 | 7jzl | 7jzn | https://pmc.ncbi.nlm.nih.gov/articles/PMC12308813/ | Exploring the Intrinsic Structural Plasticity and Conformational Dynamics of Human Beta Coronavirus Spike Glycoproteins | 2025 | YF e Silva, HH Fokoue- Journal of Chemical, 2025 - pmc.ncbi.nlm.nih.gov | Such information was related to each PDB -ID, but within the trimeric bound structures , we evaluate whether each protomer has interactions with the ligands by calculating the number of |
| 7 | 3iew | - | https://pointloma.whdl.org/sites/default/files/Harper-Synthesis%20and%20Computat... | Synthesis and Computational Analysis of Novel IspF Inhibitors | 2018 | D Harper, M Rouffet, L Votapka- Bulletin of the American, 2018 - pointloma.whdl.org | The crystal structure of IspF was taken from the Protein Data Bank, code 3iew .7 The first As for the protein, the monomer's crystal structure was cleaned and protonated with the H++ webserver (version 3.2).11 The . pdb file was manually edited to correct these protonation states |
| 8 | 2lwk | - | https://portal.ichb.pl/wp-content/uploads/2023/02/Doktorat_AleksandraJarmoowicz.... | Small molecules interacting with Influenza virus RNA and SARS-CoV-2 RNA as potential inhibitors of replication | 2022 | A Jarmoowicz - portal.ichb.pl | M121 structural motif of segment 5 (+)RNA secondary structure was investigated by importance of the conserved secondary structure of mentioned structural motif and suggest that it |
| 9 | 4ywj | 4f3y, 3ijp | https://portlandpress.com/biochemj/article-abstract/475/1/137/50160 | Plant DHDPR forms a dimer with unique secondary structure features that preclude higher-order assembly | 2018 | SAJ Watkin, JR Keown, E Richards- Biochemical, 2018 - portlandpress.com | DHDPR from a total of nine bacterial species, whereas no plant DHDPR structures were previously and X-ray crystallography to demonstrate how small elements of secondary structure are able Additionally, we use kinetic assays and an analysis of the structural flexibility of the |
| 10 | 3o2e | - | https://portlandpress.com/bioscirep/article-abstract/doi/10.1042/BSR20202956/226... | Sinorhizobium meliloti YrbA binds divalent metal cations using two conserved histidines | 2020 | T Roret, G Alloing, JM Girardet, T Perrot- Bioscience, 2020 - portlandpress.com | protein structures found in the protein databank, we tentatively attributed the changes to the Interestingly, a structure of a BolA_H from the pathogen Coxiella burnetii ligating a Co atom was solved in the frame of a structural genomic initiative for drug design, deposited in ...The coordinates of A. thaliana, B. bovis, and C. burnetii BolA proteins are from previous crystal structures (PDB entries 4PUG, 4PUH, 4PUI, 3O2E and 3TR3) |