We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DOQ | 2022 | 0 |
| 8DOS | 2022 | 0 |
| 7TMD | 2022 | 0 |
| 4WOK | 2014 | 0 |
| 8DQ9 | 2022 | 0 |
| 8DQC | 2022 | 0 |
| 8DT1 | 2022 | 0 |
| 8DTE | 2022 | 0 |
| 8DU0 | 2022 | 0 |
| 4XGH | 2015 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4ffc | - | http://5.63.15.51/bitstream/Hannan/136345/1/9781498717434.pdf | Polyamines in fungi | 2016 | J Ruiz-Herrera - 2016 - 5.63.15.51 | ... come from such different sources and have in common only their chemical similarities: Polyaminealiphatic molecules (see their structures in Figure ... Figure 3.15 structure of a 4-aminobutyrate aminotransferase (GabT) from Mycobacterium abscessus, 4FFC (Baugh, l., Phan, i., Begley, D.W., Clifton, m.c., Armour ... |
| 2 | 3s4k | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.5b01050 | Polyketide Ring Expansion Mediated by a Thioesterase, CEC Domain, in Azinomycin Biosynthesis: Characterization of AziB and AziG | 2016 | S Mori, D Simkhada, H Zhang, MS Erb, Y Zhang - Biochemistry, 2016 - ACS Publications | ... he structures of AziG were determined using the molecular replacement method, with Mycobacterium tuberculosis thioesterase (PDB entry 3S4K) as the initial model. . ... |
| 3 | 4f47 | - | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.0c00329 | Post-translational Succinylation of Mycobacterium tuberculosis Enoyl-CoA Hydratase EchA19 Slows Catalytic Hydration of Cholesterol Catabolite 3-Oxo-chol-4,22 | 2020 | AC Bonds, T Yuan, JM Werman, J Jang- ACS Infectious, 2020 - ACS Publications | Cholesterol is a major carbon source for Mycobacterium tuberculosis (Mtb) during infection, and cholesterol utilization plays a significant role in persistence and virulence within host macrophages... |
| 4 | 3i4e | 3p0x, 3oq8, 3eol, 3e5b | http://www.hindawi.com/journals/bmri/2015/895453/abs/ | Potential Inhibitors for Isocitrate Lyase of Mycobacterium tuberculosis and Non-M. tuberculosis: A Summary | 2015 | YV Lee, HA Wahab, YS Choong - BioMed Research International, 2015 - hindawi.com | ... 1F8M [5]], Escherichia coli [PDB id: 1IGW [6]], Burkholderia pseudomallei [PDB id: 3I4E (paperunpublished ... crystal structure using Ligand Fit module of Discovery Studio 2.1 software (PDB id1F8M ... View at Scopus; V. Sharma, S. Sharma, KHZ Bentrup et al., “Structure of isocitrate ... |
| 5 | 2klx | 3hhj, 3fq3 | https://www.sciencedirect.com/science/article/pii/S0888754319304598 | Potential druggable proteins and chimeric vaccine construct prioritization against Brucella melitensis from species core genome data | 2019 | M Aslam, M Shehroz, M Shah, MA Khan, SG Afridi- Genomics, 2019 - Elsevier | The radius of gyration was also predicted to assess the compactness of structure and the Gene symbols, PDB homolog ID's, Protein Names, Model C-score, Template Vs model RMSD BME_RS00875, 2KLX , glutaredoxin 3, 0.89, 2.0 1.6 , 98.718, 2.88, 0.99 (26), 9419.75, 3.27 |
| 6 | 3ek1 | 3i44 | http://www.sciencedirect.com/science/article/pii/S0009279712002773 | Potential monovalent cation-binding sites in aldehyde dehydrogenases | 2013 | L Gonz?lez-Segura, H Riveros-Rosas? - Chemico-biological Interactions, 2013 - Elsevier | ... Cation-binding sites. Family/organism, PDB code, Resolution (?), Monovalent cation in protein solution/crystallization solution, Intra, Inter, Central-cavity a. ... Brucella melitensis, 3EK1, 2.10, nr/(NH 4 ) 2 SO 4 1 M, Proposed (Water ? Na + ), Proposed (Water ? Na + ) i, No (Lys at 479 ... |
| 7 | 2lwk | - | http://www.sciencedirect.com/science/article/pii/S0006349515011601 | Predicting 3D Structure, Flexibility, and Stability of RNA Hairpins in Monovalent and Divalent Ion Solutions | 2015 | YZ Shi, L Jin, FH Wang, XL Zhu, ZJ Tan - Biophysical journal, 2015 - Elsevier | TABLE 1 The 32 RNA Molecules for 3D Structure Prediction in This Work 26 2LWK ... |
| 8 | 4iwh | - | https://pubs.acs.org/doi/abs/10.1021/acscentsci.8b00912 | Predicting Protein Complex Structure from Surface-Induced Dissociation Mass Spectrometry Data | 2019 | JT Seffernick, SR Harvey, VH Wysocki- ACS Central, 2019 - ACS Publications | from which data have been favorably compared to known crystal structures on many along with other bioanalytical MS and dissociation techniques, yields useful structural information, the sparse, not allowing for an unambiguous determination of the protein complex structure... Additionally, the Pnear also improved for 56/57 ideal cases (except 4IWH) when SID data were used, as shown in Figure S3A. |
| 9 | 3p0x | - | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6636315 | Predicting Protein-Ligand Binding Sites using Support Vector Machine with Protein Properties | 2013 | G Wong, F Leung, S Ling - 2013 - ieeexplore.ieee.org | ... The structure of proteins with bound ligands are obtained from the Protein Data Bank (PDB) [8], which ... First, the real binding sites are defined from PDB and each site is represented by a grid point in the center of it. ... They are 2cwh, 1g6c, 3p0x, 1wxg, 3kco, and 1k54. ... |
| 10 | 3ej0 | - | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6252744 | Predicting protein-ligand binding site with differential evolution and support vector machine | 2012 | GY Wong, FHF Leung, SH Ling - 2012 International Joint Conference on Neural Networks (IJCNN), 2012 - ieeexplore.ieee.org | ... Predicted quaternary structures were used rather than the tertiary structures provided in Protein Data Bank (PDB) [2]. The attributes used in SVM are selected based on the properties of protein in four different areas: ... 1AHB 1BXQ 1M5R 2ZJA 3EJ0 1C1H 1DAK 1MKA 2ZU3 3F47 ... |