We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7LYD | 2021 | 1 |
| 7LYY | 2021 | 1 |
| 7M2D | 2021 | 1 |
| 7SL5 | 2022 | 1 |
| 7SSQ | 2023 | 1 |
| 7SWK | 2021 | 1 |
| 7SY9 | 2021 | 1 |
| 6XR5 | 2020 | 0 |
| 6X9F | 2020 | 0 |
| 9YMM | 2025 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3s99 | - | https://scripts.iucr.org/cgi-bin/paper?jb5014 | The evolving story of AtzT, a periplasmic binding protein | 2019 | ML Dennis, L Esquirol, T Nebl, J Newman- Section D: Structural, 2019 - scripts.iucr.org | (2019). D75, 9951002 Page 5. cluster protein and had electron density in the binding site for a purine. Post hoc analysis of the structure and sequence showed that PDB entry 3s99 has 54% sequence identity and an rmsd of 1.2A (over $330 residues) to AtzT |
| 2 | 3uf8 | - | https://www.mdpi.com/2076-3417/9/24/5389 | Carotenoids Overproduction in Dunaliella Sp.: Transcriptional Changes and New Insights through Lycopene Cyclase Regulation | 2019 | F Elleuch, HB Hlima, M Barkallah, P Baril, S Abdelkafi- Applied Sciences, 2019 - mdpi.com | and cytochrome b 6 /f complex and maintains the integrity of cell architecture [7]. It attempted to understand how this stress could affect LCYB molecule by generating its 3D structure to 200 bp, chosen temperature (Tm) around 60 C, and avoiding secondary structures and self |
| 3 | 3i3r | - | https://scripts.iucr.org/cgi-bin/paper?ud5007 | Crystal structures of the closed form of Mycobacterium tuberculosis dihydrofolate reductase in complex with dihydrofolate and antifolates | 2019 | JA Ribeiro, SM Chavez-Pacheco- Section D: Structural, 2019 - scripts.iucr.org | mode and protein conformation, we solved the structure of the MtDHFRNADPHDIA ternary complex and compared it with the structure of the of MtDHFRNADPHPMX (yellow) and the B. bovis DHFR domain in complex with NADPH and PMX ( PDB entry 3i3r ; Begley et |
| 4 | 6mfk | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3793 | Structural and functional characterization of three Type B and C chloramphenicol acetyltransferases from Vibrio species | 2019 | A Alcala, G Ramirez, A Solis, Y Kim, K Tan- Protein, 2019 - Wiley Online Library | from P. aeruginosa ( PDB IDs: 1XAT, 2XAT7) and E. anophelis ( PDB ID: 6MFK ). Known SAT 1(A)]. When we compared our structures of the Vibrio proteins with CATs and SATs from the PDB , we found the The AfCAT structure had |
| 5 | 3gwc | - | http://search.proquest.com/openview/aa0a9dc6c9a061aa0200e2456abf28ac/1?pq-origsi... | Virtual Screening of Novel Potent Molecules Targeting enoyl-ACP reductase as Antitubercular Agents by Molecular Docking studies | 2019 | V Shivakumar, PM Ramsana, M Risfa- Journal of, 2019 - search.proquest.com | Fig 2. Structure and portions nomenclature of linezolid V. Shivakumar et al /J. Pharm. Sci. & Res NO. PDB ID RESOLUTION ENZYMES YEAR 1 2AF6 2.01 Trymidylate synthase 2005 2 2X23 1.80 enoyl-ACP reductase 2010 3 3GWC 1.9 Trymidylate synthase 2009 |
| 6 | 5dvw | - | http://journal.umpalangkaraya.ac.id/index.php/bjop/article/view/836 | Computational Drug Design against Ebola Virus Targeting Viral Matrix Protein VP30 | 2019 | A Venkatesan, L Ravichandran- Borneo Journal of, 2019 - journal.umpalangkaraya.ac.id | Protein structure preparation The protein crystal structure of Ebola VP30 protein ( PDB code: 5DVW ) with the resolution of 1.75 was retrieved from RCSB Protein Data Bank ( PDB ), a repository providing crystal structures of biotic macromolecules (Berman et al., 2000) |
| 7 | 5w25 | - | https://link.springer.com/chapter/10.1007/978-3-030-05282-9_10 | Impact of Target-Based Drug Design in Anti-bacterial Drug Discovery for the Treatment of Tuberculosis | 2019 | AC Pushkaran, R Biswas, CG Mohan- Structural Bioinformatics, 2019 - Springer | Table 3 Crystal structure of the key druggable targets in Mtb. Molecular target. Pathways involved. PDB ID. DprE1. Arabinogalactan biosynthesis AspS. Protein synthesis. 5W25 . Peptide Deformylase. Maturation of nascent polypeptides. 3E3U. DNA Gyrase |
| 8 | 6axe | 4ex4 | https://aspace.repository.cam.ac.uk/handle/1810/298685 | The glyoxylate shunt as a target for antibacterial intervention in Pseudomonas aeruginosa | 2019 | AC McVey - 2019 - aspace.repository.cam.ac.uk | The structure of MSG from four prokaryotic species has been resolved by X-ray crystallography: E. coli... Mycobacterium marinum (PDB entry 6AXE), and Mycobacterium leprae (PDB entry 4EX4). Also, the E. coli MSG structure has been solved by NMR |
| 9 | 4f2n | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/ardp.201800299 | Antileismanial activity, mechanism of action study and molecular docking of 1, 4bis (substituted benzalhydrazino) phthalazines | 2019 | AH Romero, N Rodrguez, H Oviedo- Archiv der, 2019 - Wiley Online Library | candidate for further pharmacokinetic and in vivo experiments as antileishmanial agent, and as a platform for further structural optimization ... Representation of molecular docking of 1,4‐bis‐(substituted benzalhydrazino) phthalazine 3b on the superoxidedismutase active sites of Leishmania major (PDB code: 4F2N) |
| 10 | 2kn9 | - | https://www.ijper.org/sites/default/files/IndJPhaEdRes_53_2s-143.pdf | Structure Based Computational Exploration of Beilschmiedia Compounds with Selected Targets against Multidrug-Resistant Mycobacterium tuberculosis | 2019 | M Yasir, P Singh, S Chohan, R Shrivastava- INDIAN JOURNAL OF, 2019 - ijper.org | Protein Name PDB - ID Binding Energy (kcal/mol) Antigen 85C 1dqz -3.34 Cytochrome P450 Crystal structure of 3-bromopyruvate modified isocitrate lyase (icl) 1f8m -2.09 EmbR 2ff4 -4.38 Hydroxymycolate synthase MmaA4 2fk7 - Zinc-substituted rubredoxin B 2kn9 -3.46 Cell |