We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6WWD | 2020 | 0 |
| 6WQM | 2020 | 0 |
| 6WOM | 2020 | 0 |
| 6WHJ | 2020 | 0 |
| 6WFM | 2020 | 0 |
| 6WBD | 2020 | 0 |
| 9YN9 | 2025 | 0 |
| 6W80 | 2020 | 0 |
| 6W6A | 2020 | 0 |
| 9YRU | 2025 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3enk | - | http://scripts.iucr.org/cgi-bin/paper?cb5020 | Structure and in silico substrate-binding mode of ADP-L-glycero-D-manno-heptose 6-epimerase from Burkholderia thailandensis | 2013 | MS Kim, A Lim, SW Yang, J Park, D Lee? - Acta Crystallographica Section D Biological Crystallography, 2013 - scripts.iucr.org | ... complexed with six different types of substrate have been deposited in the Protein Data Bank (Table 2 ... Cov ++ (%), Cavity volume (? 3 ), Molecular volume (? 3 ), Cavity/molecule, RelatedPDB entries. ... B. pseudomallei (3enk ), UDP- -D-glucose, 7.13, 2.72, 22, 37, 93, 830.8, 181.5, ... |
| 2 | 4q1t | - | https://www.pnas.org/doi/abs/10.1073/pnas.2413673121 | Challenging a decades-old paradigm: ProB and ProA do not channel the unstable intermediate in proline synthesis after all... | 2024 | MS Newton, AL Azadeh, AB Morgenthaler- Proceedings of the, 2024 - pnas.org | We show that changes in the structures of the kinase or jejuni ( PDB 2AKO). Conserved or conservatively substituted glutamate and sulfate in PDB 2J5V and ADP in PDB 2AKO. These ...Fig. 4. Replacement of E. coli ProB with ProBs from B. thailandensis and C. jejuni does not impair growth of E. coli on glucose. (A) Surfaces of ProB protomers from E. coli (PDB 2J5V), B. thailandensis (PDB 4Q1T), and C. jejuni (PDB 2AKO) |
| 3 | 3gka | - | https://link.springer.com/article/10.1007/s00253-019-10287-2 | Two new ene-reductases from photosynthetic extremophiles enlarge the panel of old yellow enzymes: CtOYE and GsOYE | 2020 | MS Robescu, M Niero, M Hall, L Cendron- Applied Microbiology, 2020 - Springer | The most peculiar structural features of each enzyme are depicted in bright orange (loop 3 In the active site of GsOYE structure , a chloride anion, present in the crystallization In the structures of the GsOYE complexes, both para-hydroxybenzaldehyde (pHBA; PDB : 6S31) (Fig |
| 4 | 4jnq | - | http://www.mdpi.com/2218-0532/85/1/5 | Natural Products as New Treatment Options for Trichomoniasis: A Molecular Docking Investigation | 2017 | MS Setzer, KG Byler, IV Ogungbe, WN Setzer - Scientia Pharmaceutica, 2017 - mdpi.com | ... Page 8. Sci. Pharm. 2017, 85, 5 8 Figure 4. Overlay of the protein structures of Brucella melitensisTxR, PDB 4JNQ [24] (red ribbon), and the homology model of Trichomonas vaginalis TxR (blueribbon). The co-crystallized ligand is shown as a wireframe structure. ... |
| 5 | 4whx | - | https://d-nb.info/1172351694/34 | ω-Transaminases as Promising Biocatalysts for the Chiral Synthesis of β-Amino Acids | 2018 | MSO Buss - thesis | The -Transaminase Engineering Database (oTAED): a navigation tool in protein sequence and structure space o Review about the protein stability engineering in silico tool FoldX ... The largest homologous family (HFam 11) includes 90% of all Fold type IV sequences and 23 annotated structures such as a branched-chain-amino-acid TA (PDB entry 4WHX) |
| 6 | 6wps | 7jw0, 7jxe, 7jv2, 7k43, 7jvc | https://www.mdpi.com/965720 | Structural analysis of neutralizing epitopes of the SARS-CoV-2 spike to guide therapy and vaccine design strategies | 2021 | MT Finkelstein, AG Mermelstein, E Parker Miller- Viruses, 2021 - mdpi.com | Multiple structures of S in complex with ACE2 have been determined [9,17,21,22,26 S proteins from SARS-CoV, SARS-CoV-2, and MERS-CoV undergo dramatic structural changes to S2 forms an elongated structure , and the two heptad repeats, HR1 and HR2, eventually form a ... S2M11 from RBM Class III (PDB ID 7K43 [71]), and CR3022 (left) and S309 (right) from RBD Core (PDB IDs 6W41 [86] and PDB ID 6WPS [ |
| 7 | 6ws6 | - | https://www.frontiersin.org/articles/10.3389/fimmu.2021.652223/full | CAR-NK Cells Effectively Target SARS-CoV-2-Spike-Expressing Cell Lines In Vitro | 2021 | MT Ma, S Badeti, CH Chen, J Kim- Frontiers in, 2021 - frontiersin.org | Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) is highly contagious and presents a significant public health issue. Current therapies used to treat coronavirus disease 2019 (COVID-19) include monoclonal antibody cocktail, convalescent plasma, antivirals ... Plasmid construct of S309-CAR. The SFG retroviral vector contains the S309 single chain antibody fragment (accession code 6WS6 on PDB) |
| 8 | 3gka | - | http://www.sciencedirect.com/science/article/pii/S0301462213001397 | Structural studies of the< i> Trypanosoma cruzi</i> Old Yellow Enzyme: Insights into enzyme dynamics and specificity | 2013 | MT Murakami, NC Rodrigues, LM Gava? - Biophysical Chemistry, 2013 - Elsevier | ... of the TcOYE structure in P2 1 2 1 2 1 and P2 1 crystalline forms have been deposited in the Protein Data Bank with the ... ? rmsd over 348 C? atoms - PDB code: 2GOU) and Burkholderia pseudomallei (BpOYE - 1.24 ? rmsd over 341 C? atoms - PDB code: 3GKA) revealed a ... |
| 9 | 3ily | - | https://www.ingentaconnect.com/contentone/ben/cpd/2018/00000024/00000014/art0001... | Virtual Screening Studies for Discovery of Novel Inhibitors of Inflammatory Process Targets | 2018 | MT Scotti, MF Alves- Current, 2018 - ingentaconnect.com | The structure -based pharmacophore models were produced with several inhibitor complexes (3PDC, 31 3ANS, 27 3ANT, 3OTQ, 3KOO, 3ILY , 3I28, 1ZD5 and 1VJ540) from the PDB databank (https://www.rcsb.org/ pdb /) [139-144] |
| 10 | 3tcq | - | http://www.mdpi.com/1422-0067/17/11/1748/htm | Integrated Computational Approach for Virtual Hit Identification against Ebola Viral Proteins VP35 and VP40 | 2016 | MU Mirza, N Ikram - International Journal of Molecular Sciences, 2016 - mdpi.com | ... We have identified VP40 assemblies in a filamentous structure and have shown that disruption of these structures halts viral egress... The homology-based search inferred that the 3D coordinate crystal structure of the Reston Ebola virus RNA binding domain (PDB ID: 3KS4), in addition to the crystal structure of the Sudan Ebola virus matrix protein VP40 (PDB ID: 3TCQ), were the best hits based on query coverage ... |