We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6V91 | 2020 | 0 |
| 6VEL | 2020 | 6 |
| 6VH5 | 2020 | 0 |
| 6VJU | 2020 | 4 |
| 6VS4 | 2020 | 0 |
| 6VU9 | 2020 | 1 |
| 6VUD | 2020 | 1 |
| 6VXX | 2020 | 1520 |
| 6VYB | 2020 | 971 |
| 6VZZ | 2020 | 7 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4kyx | - | http://www.sciencedirect.com/science/article/pii/S1674205217303052 | Structural insights into the substrate recognition mechanism of Arabidopsis thaliana GPP-bound NUDX1 for noncanonical monoterpene biosynthesis | 2017 | J Liu, Z Guan, H Liu, L Qi, D Zhang, T Zou, P Yin- Molecular Plant, 2017 - Elsevier | ... P2 2121, determined 52 the structure by molecular replacement based on the available coordinates (MutT, PDB : 53 4KYX ) and refined ... Furthermore, our findings provide new opportunities for structure -guided 156 enzyme engineering (Wurtzel and Kutchan, 2016) and the ... |
| 2 | 4kyx | - | http://www.nature.com/ncomms/2015/150804/ncomms8871/full/ncomms8871.html | Crystal structure, biochemical and cellular activities demonstrate separate functions of MTH1 and MTH2 | 2015 | M Carter, AS Jemth, A Hagenkort, BDG Page… - Nature …, 2015 - nature.com | ... The structure was solved by molecular replacement of the template structure file with PDB ID 4KYX using MolRep, and Arp/wARP was used for building the initial model, followed by iterative building cycles using the Refine program in Phenix ... |
| 3 | 4kzk | - | https://link.springer.com/article/10.1007/s10930-021-09970-z | Structural Flexibility of Peripheral Loops and Extended C-terminal Domain of Short Length Substrate Binding Protein from Rhodothermus marinus | 2021 | JE Bae, IJ Kim, Y Xu, KH Nam- The protein journal, 2021 - Springer | of RmSBP, we performed comparative analysis and substrate docking studies using a previously reported crystal structure of SBP ( PDB code 5Z6V) as the initial model structure Among them, 9 models ( PDB codes: 3LFT, 2QH8, 5ER3, 4RS3, 4KZK , 5BRA, 3KSM, 2DRI |
| 4 | 4kzk | - | https://www.preprints.org/manuscript/201909.0313 | Structural Flexibility of Peripheral Loops and Extended C-Term Domain of Short Length Substrate Binding Protein from Rhodothermus marinus | 2019 | JE Bae, IJ Kim, Y Xu, KH Nam - 2019 - preprints.org | 120 analysis and substrate docking studies using previously reported crystal structure of SBP ( PDB 121 code 5Z6V) as starting point model structure Among them, 9 models ( PDB code: 123 2QH8, 3LFT, 5ER3, 6DSP, 5BRA, 3KSM, 2DRI, 5DTE, 4KZK , 4RS3, 8ABP) with |
| 5 | 4kzp | - | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.1c00069 | Enzymatic -Oxidation of the Cholesterol Side Chain in Mycobacterium tuberculosis Bifurcates Stereospecifically at Hydration of 3-Oxo-cholest-4,22-dien-24-oyl-CoA | 2021 | T Yuan, JM Werman, X Yin, M Yang- ACS Infectious, 2021 - ACS Publications | The unique ability of Mycobacterium tuberculosis (Mtb) to utilize host lipids such as cholesterol for survival, persistence, and virulence has made the metabolic pathway of cholesterol an area of great interest for therapeutics development. Herein, we identify and characterize two genes from the Cho-region (... A search model for the apo-protein was created from 4KZP and the holo-protein model was created from the ChsB1 apo-protein model. |
| 6 | 4l82 | - | https://d-nb.info/1169915167/34 | Identification of Biological Sulfonamide Degradation | 2018 | B Ricken - 2018 - d-nb.info | 99 4.3. Identification of enzymes responsible for SMX degradation .....103 4.4. Sulfonamides molecule structure influences biodegradability .....105 pdb|4L82| Putative Oxidoreductase Rickettsia felis |
| 7 | 4l82 | - | https://www.sciencedirect.com/science/article/pii/S2405844019358530 | Simulation-based protein engineering of R. erythropolis FMN oxidoreductase (DszD) | 2019 | R Fallahzadeh, B Bambai, K Esfahani, AA Sepahi- Heliyon, 2019 - Elsevier | their PDB information, the multiple alignments of these 22 PDB files was done with the DszD. pdb (Fig 1. Predicted three dimensional structure for wild-type DszD enzyme residues (Asn or Ile residue instead of Ala79) were presented on the 3K88 and 4L82 homologous proteins |
| 8 | 4l82 | - | http://www.sciencedirect.com/science/article/pii/S1570963917302121 | N-terminus determines activity and specificity of styrene monooxygenase reductases | 2017 | T Heine, A Scholtissek, AH Westphal- et Biophysica Acta (BBA, 2017 - Elsevier | ... Here, PheA2 ( PDB ID: 1RZ1), HpaC (2D36), CobR (4IRA) and a putative oxidoreductase from Rickettsia felis ( 4L82 ) served as the structural templates [5,4547] and an iterative approach was used with Modeller Software 9.14 [48] to compute a RoStyBart model- structure . 2.4. ... |
| 9 | 4lc3 | - | http://link.springer.com/article/10.1007/s00044-017-1822-0 | Structural and functional characterization of a unique hypothetical protein (WP_003901628. 1) of Mycobacterium tuberculosis: a computational approach | 2017 | R Uddin, S Rafi- Medicinal Chemistry Research, 2017 - Springer | ... 2011). Table 8 RMSD of top Z-ranked ProBis ligands after docking with modeled structure . S.No. PDB ID. 1 st ranked RMSD (). Lowest RMSD (). 1. 1O69. 4.93. 3.45. 2. 1MDO. 3.02. 2.89. 3. 2C81. 6.43. 3.9. 4. ... 8. 3UWC. 3.37. 3.36. 9. 4K2M. 9.68. 2.5. 10. 4LC3 . 8.24. 3.91. 11. 1B9H ... |
| 10 | 4lc3 | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.170248 | Structural and functional studies of Spr1654: an essential aminotransferase in teichoic acid biosynthesis in Streptococcus pneumoniae | 2018 | X Han, R Sun, T Sandalova, A Achour- Open biology, 2018 - royalsocietypublishing.org | The crystal structures of Spr1654 and in complex with PLP and PMP can direct the future rational design of novel therapeutic compounds against S. pneumoniae... The crystal structures were determined by molecular replacement in Phaser [40] using the crystal structure of UDP-4-amino-4-deoxy-l-arabinose-oxoglutarate aminotransferase from Burkholderia cenocepacia (PDB code: 4LC3) as search model. |