We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7JZM | 2020 | 26 |
| 6VEL | 2020 | 6 |
| 6X9N | 2020 | 1 |
| 7KXA | 2020 | 2 |
| 6UWW | 2020 | 5 |
| 7JZN | 2020 | 14 |
| 6VXX | 2020 | 1770 |
| 6Q06 | 2020 | 12 |
| 6VYB | 2020 | 1080 |
| 6WSA | 2020 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3laa | - | https://www.sciencedirect.com/science/article/pii/S1047847719301728 | Structure of the UspA1 protein fragment from Moraxella catarrhalis responsible for C3d binding | 2019 | KM Mikula, R Kolodziejczyk, A Goldman- Journal of structural biology, 2019 - Elsevier | 2012) as found in SadA (2YO2, 2YNZ) (Hartmann et al., 2012) or BpaA ( 3LAA ) (Edwards et CCP4 package (Winn et al., 2011) with the structure of UspA1 165366 ( PDB : 3PR7) (Agnew Model of UspA1 299452 structure solved in this study, neck and coiled-coil domains; chain |
| 2 | 3pgz | - | http://dx.plos.org/10.1371/journal.pone.0041894 | Crystal Structure of a Monomeric Thiolase-Like Protein Type 1 (TLP1) from Mycobacterium smegmatis | 2012 | N Janardan, RK Harijan, RK Wierenga, MRN Murthy - PloS one, 2012 - dx.plos.org | ... DALI search using this domain against the PDB shows structural similarities to a molybdenum binding protein (PDB id: 1H9K) [20] and a single strand DNA binding protein (PDB id: 3PGZ) (Seattle Structural Genomics Center for Infectious Disease; Unpublished). ... |
| 3 | 5dvw | - | https://core.ac.uk/download/pdf/323470394.pdf | Napovedni modeli za identifikacijo potencialnih inhibitorjev razlinih proteinov virusa ebole | 2020 | V Hudi - 2020 - core.ac.uk | Monte Carlo MLR Multivariatna linearna regresija mRNA Informacijska ribonukleinska kislina NP Nukleoprotein PCA Metoda glavnih komponent PDB Podatkovna knjinica Knowledge of the viral structure gives us insight into the functioning of the virus and allows us to predict |
| 4 | 3s4k | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.25282/full | A family 13 thioesterase isolated from an activated sludge metagenome: Insights into aromatic compounds metabolism | 2017 | A SnchezReyez, RA BatistaGarca - Proteins: Structure, , 2017 - Wiley Online Library | ... All other parameters were set as default unless otherwise noted. Structure modelling by homology. ...In our first attempt to model ThYest_ar, I-TASSER[31] selected as templates from the PDB bacterial thioesterases (validated and putative): 1VH9 and 1VH5 (putative thioesterases from E. coli), 4K4C (thioesterase from E. coli), 1Q4T (thioesterase from Arthrobacter), 1SH8 (putative thioesterase from P. aeruginosa), 1SC0 (putative thioesterase from Haemophillus influenzae), 3S4K (putative esterase from ... |
| 5 | 6xdh | - | https://www.biorxiv.org/content/10.1101/2021.06.02.446845v1.abstract | 3D-Scaffold: Deep Learning Framework to Generate 3D Coordinates of Drug-like Molecules with Desired Scaffolds. | 2021 | RP Joshi, N Gebauer, N Kumar, M Bontha- bioRxiv, 2021 - biorxiv.org | generates 3D coordinates of the molecules with a given core structure ; (II) It works equally 3 reasonable molecules even with small training datasets due to the robust architecture of the (Mpro) and a SARS-CoV-2 non- structural protein endoribonuclease (NSP15). ... As a test case example, we generated non-covalent inhibitors for the SAR-CoV-2 non-structural protein endoribonuclease (NSP15) target (PDB ID: 6XDH) by optimizing Exebryl-1 based compounds |
| 6 | 4wny | - | https://www.biorxiv.org/content/10.1101/2020.10.03.324806v1.abstract | A Universal Stress Protein upregulated by hypoxia may contribute to chronic lung colonisation and intramacrophage survival in cystic fibrosis | 2020 | A O'Connor, R Berisio, M Lucey, K Schaffer, S McClean- bioRxiv, 2020 - biorxiv.org | abilities. 253 To identify structural determinants responsible for the different behaviours of USP76 and 254 USP92, in particular their different abilities to bind to epithelial cells, we used homology 255 modelling and analysed resulting structures the best template was the BupsA stress protein from Burkholderia pseudomallei (PDB code 563 4wny, seqid 69.2%). |
| 7 | 6x79 | - | https://www.biorxiv.org/content/10.1101/2021.02.17.431625v1.abstract | A rigorous framework for detecting SARS-CoV-2 spike protein mutational ensemble from genomic and structural features | 2021 | S Fatihi, S Rathore, A Pathak, D Gahlot, M Mukerji- bioRxiv, 2021 - biorxiv.org | Cryo-EM structures of the D614G spike structure have revealed that the mutant D614 is stable with RBD in an up mational states of the spike were analysed (see Methods for PDB ids) spike conformers showed large structural changes, with an average deviation of 2.77 0.42 ... 18 cryo-EM structures for closed spike conformation (PDB ID: 6ZGE, 6VXX, 6X2C, 6X6P, 6X29, 6X79, 6XF5, 6XLU, 6XM5, 6ZB4, 6ZB5, 6ZGI, 6ZP0, 7CAB, 7DDD, 7DF3, 7JJI and 7JWY) were taken from RCSB P |
| 8 | 4w65 | - | http://aem.asm.org/content/early/2017/06/12/AEM.01016-17.abstract | Functional analysis of a novel -(1, 3)-glucanase from Corallococcus sp. EGB containing a fascin-like module | 2017 | J Zhou, Z Li, J Wu, L Li, D Li, X Ye, X Luo - Applied and , 2017 - Am Soc Microbiol | ... The GH16 domain sequence of LamC was aligned with the following proteins: β-(1,3)-glucanase A1 (GlcA) from B. circulans (accession no. P23903), ... and the glycoside hydrolase family protein from Mycobacterium fortuitum (PDB no. 4W65) ... |
| 9 | 4g6c | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744477/ | New Putative Antimicrobial Candidates: In silico Design of Fish-Derived Antibacterial Peptide-Motifs | 2020 | H Okella, JJ Georrge, S Ochwo, C Ndekezi- Frontiers in, 2020 - ncbi.nlm.nih.gov | a global docking procedure in four folds, motif-based prediction based on peptide conformation, rigid-body docking, scoring based on structural clustering; and final structure minimization. ... The affinity of peptide-motifs A15_B and A15_E was highest within chains of the target proteins (PDB ID 1rrv, 4g6c, and 4oj8). |
| 10 | 7jzl | - | https://www.nature.com/articles/s41598-025-12444-2 | Fusion of SARS-CoV-2 neutralizing LCB1 peptide with Bacillus amyloliquefaciens RNase improves antiviral efficacy | 2025 | NN Kostin, TV Bobik, EV Konovalova- Scientific Reports, 2025 - nature.com | structural interaction with the trimeric spike ( PDB : 7JZL ). Its in vivo efficacy has been demonstrated in multiple studies, including in transgenic mouse models 14 . Moreover, its compact |