We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3E5B | 2008 | 10 |
| 2KN9 | 2009 | 10 |
| 3Q8H | 2011 | 10 |
| 7N8I | 2021 | 10 |
| 3NRR | 2010 | 10 |
| 3NFW | 2010 | 10 |
| 3GAF | 2009 | 10 |
| 5UPG | 2017 | 10 |
| 7LXZ | 2021 | 10 |
| 3N58 | 2010 | 10 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4g5d | - | https://www.degruyter.com/document/doi/10.1515/chem-2024-0005/html | Anti-parasitic activity and computational studies on a novel labdane diterpene from the roots of Vachellia nilotica | 2024 | NF Al-Tannak, JV Anyam, EY Santali, AI Gray- Open, 2024 - degruyter.com | structure with proteins was retrieved from a protein data bank ( PDB ) with codes: 2P7U and 4G5D agents and a structural basis for drug design) ( structures of prostaglandin F synthase |
| 2 | 6x79 | - | https://www.biorxiv.org/content/10.1101/2021.02.25.432861v3.abstract | Antiviral Resistance against Viral Mutation: Praxis and Policy for SARS CoV-2 | 2021 | RC Penner- BioRxiv, 2021 - biorxiv.org | E of rotations of BHBs in HQ60; Table 1, Protein Data Bank structure files upon The methods of this paper are im- plented online from an uploaded PDB file at et al., Hydrogen bond rotations as a uniform structural tool for analyzing protein architecture , Nature Communications, 5 |
| 3 | 3qh8 | 3py6, 3py5 | http://www.biochemj.org/content/475/1/261 | An unusual diphosphatase from the PhnP family cleaves reactive FAD photoproducts | 2018 | GAW Beaudoin, Q Li, SD Bruner, AD Hanson- Biochemical Journal, 2018 - biochemj.org | Skip to main content. Main menu. Home; About the Journal: Scope; Editorial Board; Impact & Metrics; Benefits of Publishing; Advertising/Sponsorship; About the Biochemical Society. Current Issue; For Authors: Submit Your Paper; Submission |
| 4 | 3s99 | 4gl8, 4f3p | https://onlinelibrary.wiley.com/doi/abs/10.1002/1873-3468.12445 | An updated structural classification of substratebinding proteins | 2016 | GH Scheepers, JAL a Nijeholt, B Poolman- FEBS letters, 2016 - Wiley Online Library | 3ejw 3s99 4rxl 1laf 2pfy Also, these SBPs do not seem to interact with TRAP, but with the related TT transporters. Although our analysis did not classify Bug27 ( PDB : 2QPQ) in E-II, visual inspection of the structure suggests it also belongs to this subcluster [37]. Cluster F |
| 5 | 3r9r | - | https://www.freepatentsonline.com/y2020/0297660.html | APPLICATIONS OF SPERMINE AND DERIVATIVES THEREOF | 2020 | W Pan, W Zhu- US Patent App. 16/889,500, 2020 - freepatentsonline.com | pneumonia (4FGR, 4FE2), Mycobacterium abscessus ATCC 19977/DSM 44196 ( 3R9R ), Thermotoga maritime On the basis of the above results, the crystal structure conformations in synthetases of Saccharormyces cerevisiae ( PDB : 2CNQ) and Escherichia coli ( PDB : 2GQS) are |
| 6 | 3slg | - | https://iris.unipv.it/bitstream/11571/1214880/2/PhD%20Thesis%20Savino.pdf | Applying structural enzymology to understand the reactivity of different biocatalysts | 2017 | C Binda - iris.unipv.it | Structural biology applied to enzymes allows to describe in detail the architecture of their active sites and uncover the This method necessarily can be applied when the structure of a protein homologous to the target one is already available (ie present in the PDB database or |
| 7 | 3gmt | - | https://spiral.imperial.ac.uk/handle/10044/1/70800 | Approaches for studying allostery using network theory | 2018 | M Hodges - 2018 - spiral.imperial.ac.uk | 101 6.9 Optimization of coherent active and allosteric site motion in 3-dimensional structure . . . 102 B.1 DBSCANmethodforclustering a structural basis for allostery based on comparisons of active and inactive structures . The concept of struc |
| 8 | 3rqi | - | http://pubs.acs.org/doi/full/10.1021/bi301004v | A Predicted Structure for the PixD-PixE Complex Determined by Homology Modeling, Docking Simulations, and a Mutagenesis Study | 2013 | S Ren, R Sato, K Hasegawa, H Ohta, S Masuda - Biochemistry, 2013 - ACS Publications | ... PixE Homology Modeling The amino acid sequence of PixE was obtained from the DNA DataBank of Japan (entry ... were bacterial response regulators (best 20 defined as those with the smallest E values; PDB entries 3LUF, 3N0R, 3GT7, 1QKK, 3KHT, 3RQI, 2ZQT, 2QZJ ... |
| 9 | 5eks | - | https://www.nature.com/articles/s41589-020-0587-9 | Architecture and functional dynamics of the pentafunctional AROM complex | 2020 | HA Veraszt, M Logotheti, R Albrecht, A Leitner- Nature Chemical, 2020 - nature.com | 2: The architecture and structural characteristics of the AROM complex. figure2. a, Definition of color scheme and order of domains in the CtAROM sequence, with gray numbers according to the succession of reactions in the pathway. b, CtAROM crystal structure with active sites ... The resulting representative PDB structures are 1NVA, 1XAL, 3QBD and 5EKS, for the DHQS |
| 10 | 3kjr | - | http://pubs.acs.org/doi/abs/10.1021/ci300349s | Are homology models sufficiently good for free-energy simulations? | 2012 | S Genheden - Journal of chemical information and modeling, 2012 - ACS Publications | ... factor IXa (pdb code: 1rfn(36)) with 44% sequence identity and protein C (pdb code: 1aut ... Suitable template proteins for dhfr were found by a FASTA search(38) of the protein databank. ... The results of the FASTA search are summarized in Table 1. Finally, 2bl9, 3kjr, and 2oip were ... |