We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TWZ | 2022 | 0 |
| 7TOT | 2022 | 0 |
| 8DIS | 2023 | 0 |
| 8DIU | 2022 | 0 |
| 8DOF | 2022 | 0 |
| 8DOP | 2022 | 0 |
| 4U83 | 2014 | 0 |
| 7TN0 | 2022 | 0 |
| 4W9U | 2014 | 0 |
| 8DOQ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5ha4 | - | https://kronika.ac/wp-content/uploads/10F.pdf | Computational modelling, molecular docking, and molecular dynamics simulation studies of Enterococcus faecalis diaminopimelate epimerase | 2024 | J Chaudhary, P Sharma, N Singh, VK Srivastava - kronika.ac | .nlm.nih.gov] and converted to PDB format using Pymol software. of EfDapF was opened as PDB format, and polar hydrogen Co-crystal structure of DapF from C.glutamicum ... The available crystal structures of DapF from different organisms such as E.coli [PDB entry: 4IJZ], Bacillus anthracis [PDB entry: 2OTN], Acinetobacter baumannii [PDB entry: 5HA4], |
| 2 | 3meb | 4otl, 4f4f | http://digitalcommons.unl.edu/chemistrydiss/86/ | Bioinformatic and Biophysical Analyses of Proteins | 2017 | J Catazaro - 2017 - digitalcommons.unl.edu | structure of every protein encoded within a particular genome, the aim is to concentrate to steadily produce structural representatives of previously uncharacterized genes. Although the new structures have been deposited in the Protein Data Bank ( PDB ) 4 |
| 3 | 4mei | 4o3v, 4jf8, 4lso, 4nhf, 4kz1 | https://www.frontiersin.org/articles/10.3389/fmolb.2021.642606/full | Structural and Biochemical Analysis of OrfG: The VirB8-like Component of the Conjugative Type IV Secretion System of ICESt3 From Streptococcus | 2021 | J Cappele, A Mohamad Ali- Frontiers in molecular, 2021 - frontiersin.org | The first step of structure comparison was conducted with both DALI (Holm and Sander, 1995) and and Henrick, 2004) to fetch a complete list of VirB8 structures (26 PDB entries 16 structures was conserved (2cc3, 3ub1, 3wz3, 3wz4, 4akz, 4ec6, 4jf8, 4kz1, 4lso, 4mei , 4nhf, 4o3v |
| 4 | 4em6 | - | https://www.sciencedirect.com/science/article/pii/S0378874119324778 | Metabolomics coupled with SystemsDock reveal the protective effect and the potential active components of Naozhenning granule against traumatic brain injury | 2020 | J Cao, Y Duan, Y Liu, H Liu, C Wei, J Wang- Journal of, 2020 - Elsevier | Orthogonal projection to latent structure -discriminate analysis (OPLS-DA) was also applied to maximize the Compounds, Docking score(> 6.0), Proportion of protein(%), PDB entry, Source 47.2, 4JYU, 4BBE, 1GJO, 3GJS, 4UI1, 2OOW, 4JC1, 5XSR, 1X9D, 6EYI, 4EM6 , 1TJJ, 2OC2 |
| 5 | 3i4e | 3p0x | http://link.springer.com/article/10.1007/s11274-013-1258-8 | Residues Asn214, Gln211, Glu219 and Gln221 contained in the subfamily 3 catalytic signature of the isocitrate lyase from Pseudomonas aeruginosa are involved in its catalytic and thermal properties | 2013 | J Campos-Garcia, C Diaz-Perez? - World Journal of Microbiology and Biotechnology, 2013 - Springer | ... The ICL-Pa model in the open state was built using homologous ICL from A. nidulans (PDB 1DQU), Burkholderia pseudomallei (PDB 3I4E), and E. coli (PDB 1IGW), whereas the closed state model was built using the closed model of a homologous ICL from Brucella melitensis ... |
| 6 | 3ezo | - | http://pubs.rsc.org/en/content/articlehtml/2014/mb/c4mb00443d | Fatty acid biosynthesis revisited: structure elucidation and metabolic engineering | 2015 | J Beld, DJ Lee, MD Burkart - Molecular BioSystems, 2015 - pubs.rsc.org | ... from Helicobacter pylori), 3TQE (from Coxiella burnetii), 3PTW (from Clostridium perfringens),2QC3 (from Mycobacterium tuberculosis), 3EZO (from Burkholderia ... (d) The X-ray crystal structureof mechanistically crosslinked E. coli AcpP with FabA (PDB: 4KEH). ... |
| 7 | 3f9i | - | http://www.rcsb.org/pdb/general_information/news_publications/newsletters/2014q2... | Education Corner | 2014 | J Beckham - Newsletter, 2014 - rcsb.org | ... that organism that is essential for survival or virulence (eg fatty acid biosynthesis enzymes 3F9I, dihydrofolate reductases 3DAT, or host-pathogen signaling phosphatases 2Y2F). The students narrow their selection by those enzyme which have an available PDB crystal structure ... |
| 8 | 5i1f | - | http://scripts.iucr.org/cgi-bin/paper?dp5104 | Structure of the Bacillus anthracis dTDP-l-rhamnose-biosynthetic enzyme glucose-1-phosphate thymidylyltransferase (RfbA) | 2017 | J Baumgartner, J Lee, AS Halavaty- Section F: Structural, 2017 - scripts.iucr.org | The Mg2+ ion is modeled from the RffH structure The GalU homologs are from Burkholderia vietnamiensis ( PDB entry 5i1f ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) and Sphingomonas elodea ( PDB entry 2ux8), respectively |
| 9 | 3laa | - | http://www.sciencedirect.com/science/article/pii/S1438422114001696 | A domain dictionary of trimeric autotransporter adhesins | 2014 | J Bassler, BH Alvarez, MD Hartmann… - International Journal of …, 2014 - Elsevier | ... Name, Description, Topological crossover, PDB. Anchor, Trimeric, 12-stranded outermembrane β-barrel, –, 2gr7. Stalk, Slender segment of predominantly coiled-coil structure, –, ...Long neck, Neck variant of 22 residues length, 120° cw, 3laa. ... |
| 10 | 4f2n | 4f40 | https://www.recima21.com.br/index.php/recima21/article/view/148 | DOCKING MOLECULAR E AVALIAO DA ATIVIDADE ANTILEISHMANIA IN VITRO DE UM COMPLEXO METLICO DE RUTNIO COM EPIISOPILOTURINA E | 2021 | J Arajo- -Revista Cientfica Multidisciplinar-ISSN 2675-6218, 2021 - recima21.com.br | The 3D protein structures of L. major targets were obtained from the Protein Data Bank ( PDB ) database with codes 1e7w (Pteridine reductase), 5nzg (UDP-glucose Pyrophosphorylase), 5g20 (Glycyl Peptide N-tetradecanoyltransferase), 5c7p Enzimas Identificao PDB 4F2N |