We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YRX | 2025 | 0 |
| 6UJD | 2019 | 0 |
| 6UH2 | 2019 | 0 |
| 6UDG | 2019 | 0 |
| 6UDE | 2019 | 0 |
| 6UCZ | 2019 | 0 |
| 6TYJ | 2020 | 0 |
| 9YRZ | 2025 | 0 |
| 9YS0 | 2025 | 0 |
| 6Q1Y | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3f0g | - | http://www.biomedcentral.com/1472-6807/14/1/ | Crystal structures of IspF from Plasmodium falciparum and Burkholderia cenocepacia: comparisons inform antimicrobial drug target assessment | 2014 | J Kalinowska-T, PK Fyfe, A Dawson and WN Hunter - BMC Structural Biology, 2014 - biomedcentral.com | ... Structural comparisons of IspF orthologues from the Protein Data Bank (PDB) were carried out using the DALI server [28]. Pairwise sequence identities range from 28 to 90%, Z scores from 18 to 31 and RMSD values from 0.3 to 2.5 ?. ... |
| 2 | 3kw3 | - | https://www.biorxiv.org/content/early/2018/06/13/346130.abstract | Computational evidence of a new allosteric communication pathway between active sites and putative regulatory sites in the alanine racemase of Mycobacterium | 2018 | J Jyothikumar, S Chandani, R Tangirala- bioRxiv, 2018 - biorxiv.org | Fig 3 Structure -based multiple sequence alignment of alanine racemases E. coli ( PDB code: 2RJG), S. pneumoniae ( PDB code: 3S46), P. fluorescens ( PDB code: 2ODO), P. aeruginosa ( PDB code: 1RCQ), A. baumannii ( PDB code: 4QHR), B. henselae ( PDB code: 3KW3 ) |
| 3 | 7skz | 7sl5 | https://www.research-collection.ethz.ch/entities/publication/05860c88-0378-4184-... | Isolation and Characterization of Broadly Neutralizing Antibodies to Coronaviruses | 2022 | J Jerak - 2022 - research-collection.ethz.ch | -specific structural differences might affect the accessibility of this immunogenic site. Structure (C) Crystal structure of trimeric prefusion stabilized SARS-CoV-2 ( PDB 6VSB 45) with S1 |
| 4 | 3h81 | - | https://link.springer.com/content/pdf/10.1007/s12275-020-0089-1.pdf | Structural and sequence comparisons of bacterial enoyl-CoA isomerase and enoyl-CoA hydratase | 2020 | J Hwang, CS Jeong, CW Lee, SC Shin, HW Kim- Journal of, 2020 - Springer | (D) The electrostatic surface potential of the trimeric HyECH structure also shows that the periphery of the putative ligand-binding site has a positive charge MtECH, ECH from M. tuberculosis ( PDB code 3H81 ). Page 7. Crystal structures of BoECI and HyECH 7 |
| 5 | 6wps | 6wpt | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7586990/ | Immunological strategies against spike protein: Neutralizing antibodies and vaccine development for COVID19 | 2020 | J Huang, H Huang, D Wang, C Wang- Clinical and, 2020 - ncbi.nlm.nih.gov | Structural data of RBD of SARSCoV2 S protein with CR3022 Fab was retrieved from Protein Databank. (C) Structure of SARSCoV2 S protein with neutralizing antibody S309 Fab fragment ( PDB : 6WPS ) is shown in close state |
| 6 | 5j92 | - | https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.14847 | Preferential catabolism of the (S)enantiomer of the herbicide napropamide mediated by the enantioselective amidohydrolase SnaH and the dioxygenase Snpd in | 2019 | J Huang, D Chen, J Jiang- Environmental microbiology, 2019 - Wiley Online Library | molecular docking. A homology model of Snpd was built based on chain A of the 5J92 template (sharing 39% identity with Snpd; PDB code; resolution: 1.95 ). A Snpd- KG-FeO complex structure was established in a similar manner as SnaH-Zn-H2O. The |
| 7 | 3ftp | 3f9i, 3grp | http://jb.asm.org/content/198/3/463.short | Dissecting the structural elements for the activation of -ketoacyl-(acyl carrier protein) reductase from Vibrio cholerae | 2016 | J Hou, H Zheng, M Chruszcz - Journal of , 2016 - Am Soc Microbiol | ... All enzymes in the active state (shown in gray with PDB accession numbers 1Q7B, 1UZN, 2C07, 2P68, 2UVD, 3FTP, 3LYL, 3OP4, 3RRO, 3OSU, and 4AFN) share the same open conformation in the cofactor binding site, while all the enzymes in the inactive state (shown in blue with PDB accession numbers 1I01, 1UZL, 2NTN, 3F9I, 3GRP, and 3TZC) have disordered ... |
| 8 | 4ffc | - | https://www.sciencedirect.com/science/article/pii/S0006291X19308538 | Crystal structure of -aminobutyrate aminotransferase in complex with a PLP-GABA adduct from Corynebacterium glutamicum | 2019 | J Hong, KJ Kim- Biochemical and biophysical research communications, 2019 - Elsevier | microorganisms, including P. aurescens (PaGABA-AT, PDB code 4ATP), Mycobacterium abscessus (MaGABA-AT, PDB code 4FFC ), and E. coli (EcGABA-AT, PDB code 1SF2) (Fig of CgGABA-AT with that of other GABA-ATs, we superimposed the CgGABA-AT structure and all |
| 9 | 3tmg | - | http://jb.asm.org/content/199/5/e00746-16.short | Conserved ABC Transport System Regulated by the General Stress Response Pathways of Alpha-and Gammaproteobacteria | 2017 | J Herrou, JW Willett, DM Czy, G Babnigg - Journal of , 2017 - Am Soc Microbiol | ... meliloti ChoX (PDB IDs 2REG and 2RIN) (37, 38) and EhuB (PDB ID 2Q88) (39), E. coli ProX(PDB IDs 1R9L and 1R9Q) (40), and Borrelia burgdorferi ProX (PDB ID 3TMG). ... Residue numberingstarts with the first residue present in the corresponding structure in the PDB. ... |
| 10 | 3tmg | - | http://jb.asm.org/content/early/2016/12/16/JB.00746-16.abstract | A conserved ABC transport system regulated by the general stress response pathways of Alpha-and Gammaproteobacteria | 2016 | J Herrou, JW Willett, DM Czy, G Babnigg - Journal of , 2016 - Am Soc Microbiol | ... We included sequences of class I PBPs which have been co-crystallized with betaine-related ligands in our analysis, including: Archaeoglobus fulgidus ProX (PDB IDs: 1SW1, 1SW2, 1SW4 ... 1R9Q) (56), and Borrelia burgdorferi ProX (PDB ID: 3TMG) ... |