We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YRX | 2025 | 0 |
| 6UJD | 2019 | 0 |
| 6UH2 | 2019 | 0 |
| 6UDG | 2019 | 0 |
| 6UDE | 2019 | 0 |
| 6UCZ | 2019 | 0 |
| 6TYJ | 2020 | 0 |
| 9YRZ | 2025 | 0 |
| 9YS0 | 2025 | 0 |
| 6Q1Y | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3i0p | - | https://link.springer.com/article/10.1007/s00239-018-9884-2 | Gene encoding a novel enzyme of LDH2/MDH2 family is lost in plant and animal genomes during transition to land | 2019 | LV Puzakova, MV Puzakov, AA Soldatov- Journal of molecular evolution, 2019 - Springer | Prediction of structure and properties of the discov- ered enzyme identified the highest homology to 3I0P pro- tein (P Although tertiary struc- ture of 3I0P protein (malate dehydrogenase from Entamoeba histolytica, https ://doi.org/10.2210/pdb3i 0p/ pdb ) and 1V9N |
| 2 | 2mrc | 7ry7 | https://onlinelibrary.wiley.com/doi/abs/10.1155/bri/2724332 | Gene Expression, Docking and Machine Learning in Malaria Drug Discovery: A Systematic Review | 2026 | RS Dangana, IE Ebhohimen, SA Malgwi- Biochemistry, 2026 - Wiley Online Library | The last studies have used deep learning docking methods, that is, the difusion model (Targetdif), to generate and screen novel compounds using structural features of essential... Immune/inflammatory response High mobility group Box 1 (PfHMGB1 HsHMGB1) 2MRC, 1HME |
| 3 | 3krs | - | https://www.mdpi.com/2076-2607/8/1/40 | Gene Cloning, Recombinant Expression, Characterization, and Molecular Modeling of the Glycolytic Enzyme Triosephosphate Isomerase from Fusarium oxysporum | 2020 | B Hernndez-Ochoa, S Gmez-Manzo- Microorganisms, 2020 - mdpi.com | Triosephosphate isomerase (TPI) is a glycolysis enzyme, which catalyzes the reversible isomerization between dihydroxyactetone-3-phosphate (DHAP) and glyceraldehyde-3-phosphate (GAP). In pathogenic organisms, TPI is essential to obtain the energy used to survive and infect ... Figure 2. Bioinformatic analysis of FoxTPI with other triosephosphate isomerases (TPIs)... , 3KRS (Cryptosporidium Parvum), 5UPR (Toxoplasma gondii), |
| 4 | 3tmg | 4z9n, 4f3p | https://www.biorxiv.org/content/10.1101/2021.01.27.428399v1.abstract | Gating the channel pore of ionotropic glutamate receptors with bacterial substrate binding proteins | 2021 | M Bernhard, B Laube- bioRxiv, 2021 - biorxiv.org | The bacterial GluR0 receptor was chosen due to its less complex architecture compared to eukaryotic iGluRs, characterized by the lack of an NTD, a Therefore, we used the structure of the glutamate-bound closed GluR0-LBD conformation (Mayer et al., 2001) ( PDB ID |
| 5 | 6c5v | - | https://books.google.com/books?hl=en&lr=&id=32CqDwAAQBAJ&oi=fnd&pg=PA313&dq=%226... | Gammaherpesvirus entry and fusion: A tale how two human pathogenic viruses enter their host cells | 2019 | BS Mhl, J Chen, R Longnecker- Adv. Virus Res, 2019 - books.google.com | 323 Gammaherpesvirus entry and fusion (Waterhouse et al., 2018) based on the crystal structures of EBV gB ( PDB ID: 3FVC), gH ( 6C5V ) and gL The structural sequence alignment of EBV and KSHV gB based on the crystal structure of EBV gB (3FVC)(Backovic et al., 2009 |
| 6 | 5i1f | - | https://www.mdpi.com/1422-0067/21/1/280 | GTP Preference of d-Glycero--d-manno-Heptose-1-Phosphate Guanylyltransferase from Yersinia pseudotuberculosis | 2020 | S Kim, MS Kim, S Jo, DH Shin- International Journal of Molecular, 2020 - mdpi.com | 2). In the case of GalU from Burkholderia vietnamiensis (BvGalU, PDB ID: 5I1F ), there are two In contrast, some of AMPPN bound structures can be searched in the PDB ( PDB ID: 5KQ8 an induced-fit conformational change when they interact with GMPPN in the crystal structure |
| 7 | 7jzl | - | https://www.nature.com/articles/s41598-025-12444-2 | Fusion of SARS-CoV-2 neutralizing LCB1 peptide with Bacillus amyloliquefaciens RNase improves antiviral efficacy | 2025 | NN Kostin, TV Bobik, EV Konovalova- Scientific Reports, 2025 - nature.com | structural interaction with the trimeric spike ( PDB : 7JZL ). Its in vivo efficacy has been demonstrated in multiple studies, including in transgenic mouse models 14 . Moreover, its compact |
| 8 | 3meq | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2011.07914.x/full | Furfural reduction mechanism of a zinc-dependent alcohol dehydrogenase from Cupriavidus necator JMP134 | 2012 | CH Kang, R Hayes, EJ Sanchez, BN Webb? - Molecular Microbiology, 2012 - Wiley Online Library | ... through the coordinates of ADH from Brucella melitensis (3MEQ). Iterative model building and refinement took place using the programs coot (Emsley et al., 2010) and phenix (Adams et al., 2010). All FurX coordinates have been deposited in the Protein Data Bank: 3S1L (apo ... |
| 9 | 5b8i | - | https://www.sciencedirect.com/science/article/pii/S1570963919300445 | Fungal Lanosterol 14-demethylase: A target for next-generation antifungal design | 2020 | BC Monk, AA Sagatova, P Hosseini, YN Ruma- et Biophysica Acta (BBA, 2020 - Elsevier | cerevisiae LDM as a template ( PDB 4LXJ), suggested that crystal structure of the catalytic domain of human CYP51 ( PDB calcineurinB in complex with FK506 ( 5B8I ); S. cerevisiae Elf2 |
| 10 | 4qtp | - | http://www.sciencedirect.com/science/article/pii/S0378111916305200 | Functional, structural and epitopic prediction of hypothetical proteins of Mycobacterium tuberculosis H37Rv: An in silico approach for prioritizing the targets | 2016 | A Gazi, MG Kibria, M Mahfuz, R Islam, P Ghosh - Gene, 2016 - Elsevier | ... Conformational B cell epitopes of NP_216420.1 (UniProt ID: O07728) predicted from the 3D structure template under PDB ID 4QTP (Crystal structure of an anti-sigma factor antagonist from M. paratuberculosis). ... |