We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YRX | 2025 | 0 |
| 6UJD | 2019 | 0 |
| 6UH2 | 2019 | 0 |
| 6UDG | 2019 | 0 |
| 6UDE | 2019 | 0 |
| 6UCZ | 2019 | 0 |
| 6TYJ | 2020 | 0 |
| 9YRZ | 2025 | 0 |
| 9YS0 | 2025 | 0 |
| 6Q1Y | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4xi8 | 4py3, 4n67, 4lu4 | https://www.theses.fr/2017SACLS452 | Structure et fonction des toxines bactriennes domaine FIC | 2017 | S Veyron - 2017 - theses.fr | proteins from Helicobacter pylori and Neisseria meningitidis, which were determined as part of Structural Genomics Initiatives in 2006 ( PDB entries 2G03 and 2F6S, which have no associated publications). However, the structure of FIC proteins only began to be discussed |
| 2 | 4g6c | 4gnv | http://onlinelibrary.wiley.com/doi/10.1002/pro.3166/full | Conformational flexibility of the glycosidase NagZ allows it to bind structurally diverse inhibitors to suppress lactam antibiotic resistance | 2017 | G Vadlamani, KA Stubbs, J Dsir, Y Blriot - Protein , 2017 - Wiley Online Library | ... iMosflm,[31] then scaled and averaged using SCALA (CCP4 package).[32] The BcNagZ:inhibitorcomplex structures were determined by molecular replacement using PHASER (from within thePHENIX package)[33] and a structure of BcNagZ (PDB ID: 4G6C) ...The position of the loop is also consistent with a previous structure of BcNagZ bound to the non-selective N-acetyl-β-glucosaminidase inhibitor 3-acetamido-4,5,6-trihydroxyazepane MM-124 (PDB ID: 4MSS)[9] and the product GlcNAc (PDB ID: 4GNV), indicating that ... |
| 3 | 5eo6 | 4wsh, 4exq | http://mmbr.asm.org/content/81/1/e00048-16.short | Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product | 2017 | HA Dailey, TA Dailey, S Gerdes, D Jahn… - Microbiology and …, 2017 - Am Soc Microbiol | ...the structures of CgdC from yeast (PDB accession number 1TLB), human (accession number 2AEX), Leishmania major (accession number 3DWR), Leishmania donovani (accession number 3EJO), Leishmania naiffi (accession number 3E8J), and Acinetobacter baumannii (accession number 5EO6) have been solved, with all of them revealing an unprecedented fold for the monomer of large seven-stranded antiparallel β-sheets covered on both sides by α-helices.. |
| 4 | 4kna | - | http://aem.asm.org/content/83/12/e00018-17.short | Five Fatty Aldehyde Dehydrogenase Enzymes from Marinobacter and Acinetobacter spp. and Structural Insights into the Aldehyde Binding Pocket | 2017 | JH Bertram, KM Mulliner, K Shi - Applied and , 2017 - Am Soc Microbiol | ... The closest homologous structures currently available are those reported under PDB accession no. 4KNA (N-succinylglutamate 5-semialdehyde dehydrogenase from Burkholderia thailandensis) and 3JU8, with amino acid sequence identities of 63% and 62%, respectively. ... |
| 5 | 3kzx | - | https://static-content.springer.com/esm/art%3A10.1186%2Fs12859-015-0758-y/MediaO... | Multi-Scale Investigation of Protein-Protein Interactions | 2017 | Q Hou - 2017 - dare.ubvu.vu.nl | ... The protein structure on the back cover is PDB 3E8L. ... Sequence level Although an increasing number of protein structures have become available, there is still a lack of structural data for most protein sequences, which is called the 'sequence- structure gap' [Rost and Sander ... |
| 6 | 3ek2 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5401771/ | Rational Optimization of Diphenyl Ether Binding Kinetics to the Enoyl-ACP Reductase FabI1 from Burkholderia pseudomallei | 2017 | C Neckles, S Eltschkner, JE Cummings- Biochemistry, 2017 - ncbi.nlm.nih.gov | 35 The structures were solved by molecular replacement with Phaser 36 utilizing either the apo structure of bpFabI1 ( PDB entry 3EK2 ), or the complex structure of bpFabI1 with PT155 ( PDB entry 4BKU) as search model |
| 7 | 3ek2 | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b01048 | Rationalizing the Binding Kinetics for the Inhibition of the Burkholderia pseudomallei FabI1 Enoyl-ACP Reductase | 2017 | C Neckles, S Eltschkner, JE Cummings - Biochemistry, 2017 - ACS Publications | ... Structural analysis of nine enzyme:inhibitor complexes reveals that the variation in structure kinetic relationships can be rationalized by structural rearrangements of bpFabI1 and subtle changes to the orientation of the inhibitor in the binding pocket. ... |
| 8 | 4xgi | - | http://onlinelibrary.wiley.com/doi/10.1002/biot.201700305/full | Discovery of a Potentially New Subfamily of ELFV Dehydrogenases Effective for lArginine Deamination by Enzyme Mining | 2017 | W Wu, Y Zhang, J Huang, Y Wu, D Liu- Biotechnology, 2017 - Wiley Online Library | Active site of glutamate dehydrogenase ( PDB 4XGI ) (A), phenylalanine dehydrogenase ( PDB 1BW9) (B), valine dehydrogenase ( PDB 1LEH) (C Phenylalanine was inserted into the active site of valine dehydrogenase (C) by structure alignment of 1BW9 and |
| 9 | 3v7o | 4g50 | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5256280/ | Design of an expression system to enhance MBP-mediated crystallization | 2017 | T Jin, W Chuenchor, J Jiang, J Cheng, Y Li - Scientific , 2017 - ncbi.nlm.nih.gov | ... 25 , GST 26 , TRX 27 , green fluorescent protein (GFP) 28 ,29 , SUMO (pdb: 3V7O and 4G50 ...platform is increasingly appreciated 38 ,39 , the optimal sequence, length, and structure of the ...The death domain superfamily is a structural motif found in many proteins that are involved ... |
| 10 | 3gvh | - | http://scholarsbank.uoregon.edu/xmlui/handle/1794/22884 | Investigating Bias in Protein Properties Inferred via Ancestral Sequence Reconstruction | 2017 | A Rickett - 2017 - scholarsbank.uoregon.edu | We formulate and analyze the electrostatics of 14 distinct protein families, each containing PDB structures of structural elements, send signals from cell to cell, and much more. Every protein sequence defines a unique 3-dimensional structure which a protein assumes through a |