We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5ER6 | 2015 | 0 |
| 5F9Y | 2016 | 0 |
| 5F9Z | 2016 | 0 |
| 5HA5 | 2016 | 0 |
| 5HGW | 2016 | 0 |
| 5HL6 | 2016 | 0 |
| 5HSX | 2016 | 0 |
| 8FUY | 2023 | 0 |
| 5HX9 | 2016 | 0 |
| 8G0R | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3qh4 | - | https://www.researchsquare.com/article/rs-187084/latest.pdf | Protein Engineering for Enhanced Enantioselectivity of Carboxylesterase Est924 Toward Ethyl 2-Arylpropionates | 2021 | X Liu, M Zhao, X Fan, Y Fu - 2021 - researchsquare.com | Enhancement of the enantioselectivity of carboxylesterase A by structure -based mutagenesis. J Biotechnol Page 13. Page 13/14 PDB entry A1 A2 B1 B2 Est924 I203 A203 G208 I212 3H17 M193 V194 G198 M202 3QH4 A209 F210 A214 M218 3WJ1 F197 L198 H202 F206 |
| 2 | 4fkx | - | http://link.springer.com/chapter/10.1007/978-3-319-01845-4_13 | Protein Secondary Structure Detection Using Dihedral Angle Parameters Evaluation | 2014 | M Diez, V Petuya, I Mart?nez, A Hern?ndez - The 11th IFToMM International Symposium on Science of Mechanisms and Machines Mechanisms and Machine Science , 2014 - Springer | ... To check the results obtained with the procedure, they have been compared with each proteins' structural data, available on the Protein Data Bank (PDB) and experimentally obtained. ... 1zac. 96.6. 1k9p. 96.62. 3cln. 97.2. 1k20. 93.48. 2peq. 100. 4fkx. 82.35. 3sza. 86.6. ... |
| 3 | 3r1j | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3765361/ | Protein Similarity Networks Reveal Relationships among Sequence, Structure, and Function within the Cupin Superfamily | 2013 | R Uberto, EW Moomaw - PLoS One, 2013 - journals.plos.org | File S1 Combined Supporting Information Files - Alpha-ketoglutarate-dependent taurine dioxygenase Mycobacterium avium 3r1j |
| 4 | 3d5t | - | http://www.sciencedirect.com/science/article/pii/S0022519315003501 | Protein cold adaptation: Role of physico-chemical parameters in adaptation of proteins to low temperatures | 2015 | S Shokrollahzade, F Sharifi, A Vaseghi… - Journal of theoretical …, 2015 - Elsevier | ... Mesophilic, Burkholderia pseudomallei, 3D5T/A, 2.51. ... Fig. 1. The structure ofadenylate kinases from the psychrophile Bacillus globisporus (PDB ID: 1S3G). ... Thestructure is shown as surface representation by Pymol software. ... |
| 5 | 3d6b | 3ii9, 3i3r, 3kjr | https://www.annualreviews.org/doi/abs/10.1146/annurev.biophys.050708.133630 | Protein crystallization using microfluidic technologies based on valves, droplets, and SlipChip | 2010 | L Li, RF Ismagilov- Annual review of biophysics, 2010 - annualreviews.org | was compared with current state-of-the-art technologies at the Seattle Structural Genomics Center crystal structures were solved at higher resolutions higher than those for structures solved at at 1.73 (PDBid:3II9) compared to 2.2 at SSGCID (PDBid: 3D6B ), and dihydrofolate |
| 6 | 6xmy | - | https://www.nature.com/articles/s41467-023-40928-0 | Protein engineering and iterative multimodule optimization for vitamin B6 production in Escherichia coli | 2023 | L Liu, J Li, Y Gai, Z Tian, Y Wang, T Wang, P Liu- Nature, 2023 - nature.com | docked into the binding pocket according to the crystal structure PDB 1PS6 and PDB 6XMY The crystal structure of PdxJ ( PDB 1M5W) showed that the octameric enzyme possesses |
| 7 | 3q1t | - | http://www.biomedcentral.com/1471-2105/14/S3/S13/ | Protein function annotation with Structurally Aligned Local Sites of Activity (SALSAs) | 2013 | Z Wang, P Yin, JS Lee, R Parasuram? - BMC Bioinformatics, 2013 - biomedcentral.com | ... A structural genomics protein from Mycobacterium avium (PDB ID 3q1t) has been reported to be an enoyl-CoA hydratase (ECH), but SALSA ... There are currently over 11,000 structural genomics (SG) protein structures in the Protein Data Bank (PDB) [1] and most of them are of ... |
| 8 | 2kwl | 2lol, 2lky, 2l3v | http://link.springer.com/10.1140/epje/i2013-13062-7 | Protein packing defects heat up interfacial water | 2013 | MB Sierra, SR Accordino, JA Rodriguez-Fris? - The European Physical Journal E, 2013 - Springer | ... 2BZT, 2eyz, 2FDQ, 2GEQ, 2jqx, 2JQY, 2JU6, 2K0P, 2K4Q, 2KJG, 2KV4, 2KWD, 2KWL, 2L3V, 2L4V ... ex- plicitly the situation for one of the proteins studied: the p53 protein (PDB 2GEQ ... this molecule represents one of the largest dehydron clusters in the Protein Data Bank [9]. From ... |
| 9 | 6d9y | 6d9n | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Protein secondary structure online server predictive evaluation | 2019 | - Chinese Journal of Bioinformatics, 2019 - search.ebscohost.com | 1 SPIDER Fig.1 Main structure of SPIDER 2.1 |
| 10 | 6nb3 | 6nb7, 6nb4, 6nb6, 6vyb, 6vxx | https://link.springer.com/article/10.1007/s00018-020-03580-1 | Protein structure analysis of the interactions between SARS-CoV-2 spike protein and the human ACE2 receptor: from conformational changes to novel | 2020 | I Mercurio, V Tragni, F Busto, A De Grassi- Cellular and Molecular, 2020 - Springer | Download PDF. Download PDF. Original Article; Published: 04 July 2020. Protein structure analysis of the interactions between SARS-CoV-2 spike protein and the human ACE2 receptor: from conformational changes to novel neutralizing antibodies |