We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YRX | 2025 | 0 |
| 6UJD | 2019 | 0 |
| 6UH2 | 2019 | 0 |
| 6UDG | 2019 | 0 |
| 6UDE | 2019 | 0 |
| 6UCZ | 2019 | 0 |
| 6TYJ | 2020 | 0 |
| 9YRZ | 2025 | 0 |
| 9YS0 | 2025 | 0 |
| 6Q1Y | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2klx | 3hhj, 3fq3 | https://www.sciencedirect.com/science/article/pii/S0888754319304598 | Potential druggable proteins and chimeric vaccine construct prioritization against Brucella melitensis from species core genome data | 2019 | M Aslam, M Shehroz, M Shah, MA Khan, SG Afridi- Genomics, 2019 - Elsevier | The radius of gyration was also predicted to assess the compactness of structure and the Gene symbols, PDB homolog ID's, Protein Names, Model C-score, Template Vs model RMSD BME_RS00875, 2KLX , glutaredoxin 3, 0.89, 2.0 1.6 , 98.718, 2.88, 0.99 (26), 9419.75, 3.27 |
| 2 | 6bfu | - | https://www.sciencedirect.com/science/article/pii/S1879625719300392 | Glycosylation of viral surface proteins probed by mass spectrometry | 2019 | AA Hargett, MB Renfrow- Current opinion in virology, 2019 - Elsevier | spike GP has 26 NGS with 15 in subunit 1 and 11 in subunit 2 ( PDB : 6BFU ) [89]. (e) Influenza virus hemagglutinin is a homotrimer with 11 NGS ( PDB : 4FNK) [92] can be coupled with other biological data to better understand the role of glycosylation in the structure and function |
| 3 | 4wbs | - | https://scripts.iucr.org/cgi-bin/paper?ft5098 | The structure of lipopolysaccharide transport protein B (LptB) from Burkholderia pseudomallei | 2019 | G Pankov, A Dawson, WN Hunter- Section F: Structural Biology, 2019 - scripts.iucr.org | A single polypeptide from Paraburkholderia phymatum LptB ( PDB entry 4wbs ; Seattle Structural Genomics Center 2. The LptB subunit fold is conserved and displays no major conformational differences irrespective of whether the cofactor is present in the structure or not |
| 4 | 6auj | 3gwc, 3ix6 | https://www.mdpi.com/1420-3049/24/8/1638 | Targeting Methyltransferases in Human Pathogenic Bacteria: Insights into Thymidylate Synthase (TS) and Flavin-Dependent TS (FDTS) | 2019 | C Pozzi, L Lopresti, G Tassone, S Mangani- Molecules, 2019 - mdpi.com | This review is aimed to summarize the current understanding of structure and function of bTSs and FDTSs and the recent id 1F4B [17]), Brucella melitensis (BmTS; PDB id 3IX6, unpublished research), and Elizabethkingia anophelis (EaTS; PDB id 6AUJ , unpublished research |
| 5 | 3tde | 5t8s, 3iml | https://www.sciencedirect.com/science/article/pii/S0022283619305480 | The interdimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase | 2019 | D Kleiner, F Shmulevich, R Zarivach, A Shahar- Journal of molecular, 2019 - Elsevier | MAT ( PDB ID), Phylum/class, Monomer length b, % sequence identity to E. coli, Interface c, M. tuberculosis ( 3TDE ), Actinobacteria/actinobacteria, 403, 59%, large, 11.5, 1983, 23, 11 1). In addition, the flexible loops (positions 89116) fully discernible in this structure were found |
| 6 | 4iwh | - | https://pubs.acs.org/doi/abs/10.1021/acscentsci.8b00912 | Predicting Protein Complex Structure from Surface-Induced Dissociation Mass Spectrometry Data | 2019 | JT Seffernick, SR Harvey, VH Wysocki- ACS Central, 2019 - ACS Publications | from which data have been favorably compared to known crystal structures on many along with other bioanalytical MS and dissociation techniques, yields useful structural information, the sparse, not allowing for an unambiguous determination of the protein complex structure... Additionally, the Pnear also improved for 56/57 ideal cases (except 4IWH) when SID data were used, as shown in Figure S3A. |
| 7 | 6c9c | - | https://www.biorxiv.org/content/10.1101/863571v1.abstract | Disorder and interfaces in proteins are two sides of the same coin | 2019 | B Seoane, A Carbone- bioRxiv, 2019 - biorxiv.org | c. Analysis of cluster 6c9c A ( PDB IDs for the structures are given in SI section S2). In the external wheel, we show one unbound structure and the chain structures containing the 12 different interfaces of this cluster: DRs in orange and IRs in blue |
| 8 | 4ix8 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/2211-5463.12715 | Biochemical and structural characterization of tyrosine aminotransferase suggests broad substrate specificity and a two state folding mechanism in Leishmania | 2019 | S Sasidharan, P Saudagar- FEBS Open Bio, 2019 - Wiley Online Library | outlier region. PROSA score of PM0081305 was -8.56 and the score remained in the region of known native structures . The template structure that was taken for modeling ( PDB ID: 4IX8 ) had a PROSA score of -8.89. The structure |
| 9 | 3nwo | - | https://arts.units.it/handle/11368/2938808 | Integration of bioinformatics analysis and experimental biocatalysis for a comprehensive approach to the synthesis of renewable polyesters | 2019 | M CESPUGLI - 2019 - arts.units.it | the structural features of a dataset of serine hydrolases, where cutinases play a central role enzyme structure , and the catalytic triad is represented by Ser105, Asp187 and His224. The This molecular architecture is responsible for the reduction of molecular oxygen by the |
| 10 | 3enk | - | https://www.nature.com/articles/s41598-019-47591-w | Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum | 2019 | YW Nam, M Nishimoto, T Arakawa, M Kitaoka- Scientific reports, 2019 - nature.com | Here, we focused on structural features of GalE from B. longum JCM1217 (bGalE) The main chain structure of bGalE is similar to those of bacterial and eukaryotic GalEs. C RMSD values (distance cutoff = 2.0 ) of the UDP-GlcNAc complex with hGalE ( PDB ID 1HZJ, ... We built a reliable homology model of BLLJ_1592 (GQME = 0.72 and QMEAN = −2.34) using the SWISS-MODEL server45 with an unpublished structure of GalE from Burkholderia pseudomallei (PDB ID: 3ENK, sequence identity = 42.3%) as a template |