We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DV0 | 2022 | 0 |
| 7TMV | 2022 | 0 |
| 8EES | 2022 | 0 |
| 7TMG | 2022 | 0 |
| 7TMF | 2022 | 0 |
| 8EGL | 2022 | 0 |
| 7TMD | 2022 | 0 |
| 4YWN | 2015 | 0 |
| 4Z0T | 2015 | 0 |
| 8EGM | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3v9o | 3urr | https://www.biorxiv.org/content/early/2018/09/06/409730.abstract | Flexible backbone assembly and refinement of symmetrical homomeric complexes | 2018 | SSR Burman, RA Yovanno, JJ Gray- bioRxiv, 2018 - biorxiv.org | For local docking, specific symmetry definitions can be recapitulated from a PDB file of a complex About 22% of all structures are unfavorable, and all but one near-native (less than 5 number of inter-chain atom-atom clashes is 50.6, compared to 21 in the native structure |
| 2 | 4ix8 | - | https://www.sciencedirect.com/science/article/pii/S0141813020341957 | Flavones reversibly inhibit Leishmania donovani tyrosine aminotransferase by binding to the catalytic pocket: An integrated in silico-in vitro approach | 2020 | S Sasidharan, P Saudagar- International Journal of Biological, 2020 - Elsevier | TAT has also been characterized in Leishmania major [26], Leishmania donovani [10], and Leishmania infantum [8]. Furthermore, the crystal structure of the TAT from L. infantum has been solved ( PDB id: 4IX8 ) [27] and the structure contained PLP in the active site cavity bound |
| 3 | 4o5m | 3u0i | https://zaguan.unizar.es/record/135847 | Flavoenzymes in Microbial Systems: Analysis of Structure-Function Relationships | 2024 | MI Minjarez Saenz, MM Medina Trullenque - zaguan.unizar.es | Esta Tesis Doctoral se plante con objeto de mejorar nuestra comprensin de los mecanismos de accin especficos de especie en sistemas dependientes de flavoenzimas como |
| 4 | 4kna | - | http://aem.asm.org/content/83/12/e00018-17.short | Five Fatty Aldehyde Dehydrogenase Enzymes from Marinobacter and Acinetobacter spp. and Structural Insights into the Aldehyde Binding Pocket | 2017 | JH Bertram, KM Mulliner, K Shi - Applied and , 2017 - Am Soc Microbiol | ... The closest homologous structures currently available are those reported under PDB accession no. 4KNA (N-succinylglutamate 5-semialdehyde dehydrogenase from Burkholderia thailandensis) and 3JU8, with amino acid sequence identities of 63% and 62%, respectively. ... |
| 5 | 4whx | 3u0g | http://link.springer.com/article/10.1007/s00792-016-0816-z | First structure of archaeal branched-chain amino acid aminotransferase from Thermoproteus uzoniensis specific for l-amino acids and R-amines | 2016 | KM Boyko, TN Stekhanova, AY Nikolaeva - Extremophiles, 2016 - Springer | ... Secondary structure elements were assigned by DSSP (Touw et al. ... In the previously describedstructures of holo BCATs (PDB codes: 3U0G, 1I1K, 1WRV), the interdomain loop was found tobe ... 7) as well as in complexes of other BCATs (for example: 2EIY, 1IYE, 4WHX and 1I1L ... |
| 6 | 3eol | - | http://repositorio.ufrn.br:8080/jspui/handle/123456789/19577 | Filogenia molecular das enzimas isocitrato liase e malato sintase e sua evoluo em Viridiplanta | 2014 | RVM Almeida - 2014 - repositorio.ufrn.br | ... Bayesian analysis). The identification of structural patterns in the evolution of theenzymes was made through homology modeling and structure prediction from proteinsequences. Based on comparative analyzes of in silico ... |
| 7 | 4wgj | 4lu4, 4py3, 4xi8 | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.210009 | Fic and non-Fic AMPylases: protein AMPylation in metazoans | 2021 | BK Chatterjee, MC Truttmann- Open Biology, 2021 - royalsocietypublishing.org | name, organism name, references, function/targets, structure ( PDB ID) BepC, Bartonella henselae, [59], triggers actin stress fibre formation in HeLa cells, 4WGJ salt bridges occur between (a) Asp117 and Lys119 of the extended flap region (a -hairpin like structure that partially |
| 8 | 3ezo | - | http://pubs.rsc.org/en/content/articlehtml/2014/mb/c4mb00443d | Fatty acid biosynthesis revisited: structure elucidation and metabolic engineering | 2015 | J Beld, DJ Lee, MD Burkart - Molecular BioSystems, 2015 - pubs.rsc.org | ... from Helicobacter pylori), 3TQE (from Coxiella burnetii), 3PTW (from Clostridium perfringens),2QC3 (from Mycobacterium tuberculosis), 3EZO (from Burkholderia ... (d) The X-ray crystal structureof mechanistically crosslinked E. coli AcpP with FabA (PDB: 4KEH). ... |
| 9 | 3laa | 4g6c | http://scitation.aip.org/content/aip/journal/jcp/140/23/10.1063/1.4882258 | Fast and anisotropic flexibility-rigidity index for protein flexibility and fluctuation analysis | 2014 | K Opron, K Xia, GW Wei - The Journal of chemical physics, 2014 - scitation.aip.org | ... The FRI is a solely structural based algorithm that does not reconstruct any protein inter- action ...the FRI prediction of protein B-factors does not require a stringently minimized structure and time ...The fFRI algorithm is developed by using appropriate data structures to avoid the ... TABLE V 3LAA 169 0.827 |
| 10 | 3moy | - | http://onlinelibrary.wiley.com/doi/10.1002/jcc.21900/full | Fast and accurate computation schemes for evaluating vibrational entropy of proteins | 2011 | B Xu, H Shen, X Zhu, G Li - Journal of computational chemistry, 2011 - Wiley Online Library | ... PDB id, Protein length, Standard NMA (kcal mol ?1 K ?1 ), Scaled BNM (kcal mol ?1 K ?1 ), Scaled GNM (kcal mol ?1 K ?1 ), Scaled ANM (kcal mol ?1 K ?1 ). 1al3, 324, 8.462, 8.405, 8.466, 8.818. ... 3m73, 314, 10.930, 10.912, 11.027, 10.248. 3moy, 263, 9.020, 9.108, 9.183, 9.171. ... |