We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8G0U | 2023 | 0 |
| 5I92 | 2016 | 0 |
| 8G0V | 2023 | 0 |
| 8SA7 | 2023 | 0 |
| 8SA8 | 2023 | 0 |
| 5IDY | 2016 | 0 |
| 5IF2 | 2017 | 0 |
| 5IF5 | 2017 | 0 |
| 5IF7 | 2017 | 0 |
| 5IF8 | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3grk | - | http://www.opus4.kobv.de/opus4-fau/files/2717/Dissertation_PB_Unibib.pdf | Expression und Mutagenese von VEP1-kodierten Progesteron-5β-Reduktasen aus pharmazeutisch interessanten Angiospermen | 2012 | P Bauer - 2012 - opus4.kobv.de | ... Parallel wurden mit Hilfe der „Superposition“-Funktion der Wincoot Software (II.2.5) in silico die Cosubstrat-Bindetasche der DlP5βR jeweils mit der von verschiedenen NADHabhängigen SDR-Enzymen überlagert (PDB: 2ztl, 3d3w, 3grk,.. |
| 2 | 6q05 | - | https://www.sciencedirect.com/science/article/pii/S1093326320305672 | Exploring the intrinsic dynamics of SARS-CoV-2, SARS-CoV and MERS-CoV spike glycoprotein through normal mode analysis using anisotropic network | 2021 | S Majumder, D Chaudhuri, J Datta, K Giri- Journal of Molecular Graphics, 2021 - Elsevier | 2.1. Protein structure retrieval. All the X-ray crystal structures for SARS-CoV-2, SARS-CoV and MERS-CoV S proteins in the lying state were taken from protein data bank [21]. The corresponding PDB IDs are 6VXX, 5X58 and 6Q05 respectively [11,22,23] |
| 3 | 6nb7 | 6nb6 | https://arxiv.org/abs/2101.01884 | Exploring the Regulatory Function of the N-terminal Domain of SARS-CoV-2 Spike Protein Through Molecular Dynamics Simulation | 2021 | Y Li, T Wang, J Zhang, B Shao, H Gong- arXiv preprint arXiv, 2021 - arxiv.org | taking the S proteins of SARS-CoV with 2 upward RBDs ( PDB ID: 6NB6) (21) and 3 upward RBDs ( PDB ID: 6NB7 ) (21) as We also conducted a time- structure based Independent Components Analysis (tICA) (34, 35) to identify slow motions with high time autocorrelation on |
| 4 | 2lwk | - | https://www.frontiersin.org/articles/10.3389/fchem.2020.00107/full?utm_source=S-... | Exploring the RNA-Recognition Mechanism Using Supervised Molecular Dynamics (SuMD) Simulations: Toward a Rational Design for Ribonucleic-Targeting | 2020 | M Bissaro, M Sturlese, S Moro- Frontiers in Chemistry, 2020 - frontiersin.org | (B) Superimposition between the experimental NMR complex ( PDB ID 2LWK , green-colored DPQ (D) RMSD of RNA phosphate atoms belonging to the backbone, computed against the PDB reference. (E) Flexibility characterizing the RNA structure during DPQ binding event |
| 5 | 3gmt | - | https://spiral.imperial.ac.uk/handle/10044/1/68684 | Exploring protein dynamics using graph theory and single-molecule spectroscopy | 2017 | R Peach - 2017 - spiral.imperial.ac.uk | 4.1 Weighted graph construction from an experimental PDB structure The increased understanding between structure , dynamics and function offers opportunities for protein ... Despite the myriad of structures, only four are available in the apo state (PDB ID: 4AKE, 2RH5, 3UMF and 3GMT) which takes the form of the open conformation. |
| 6 | 6c87 | 6byq, 6nab, 6dbb | https://search.proquest.com/openview/cd4a41694b18b16f6cb97e7640174525/1?pq-origs... | Exploring Unconventional Approaches to Molecular Replacement in X-ray Crystallography with SIMBAD | 2020 | AJ Simpkin - 2020 - search.proquest.com | to finding search models for MR is to use the sequence of the target structure to identify a approach is based on the assumption that sequence similarity is a useful guide to structural similarity final step is a brute-force search of a non-redundant derivative of the PDB provided by |
| 7 | 3mqd | - | https://ir.library.oregonstate.edu/downloads/4t64gt04f | Exploring Protein Structure: Seeing the Forest and the Trees. | 2017 | AE Brereton - 2017 - ir.library.oregonstate.edu | Experimental Methods to Obtain Structures Only a few experimental methods exist that can yield enough information to accurately determine the 3-dimensional structure of a folded protein complete structural information often comes from using a combination of the methods |
| 8 | 3mqd | - | https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/vx02... | Exploring Protein Structure: Seeing the Forest and the Trees | 2017 | AE Brereton - 2017 - ir.library.oregonstate.edu | Experimental Methods to Obtain Structures Only a few experimental methods exist that can yield enough information to accurately determine the 3-dimensional structure of a folded protein complete structural information often comes from using a combination of the methods |
| 9 | 3o0h | - | https://link.springer.com/article/10.1007/s00299-021-02717-1 | Exploration of glutathione reductase for abiotic stress response in bread wheat (Triticum aestivum L.) | 2021 | A Kaur, S Tyagi, K Singh, SK Upadhyay- Plant Cell Reports, 2021 - Springer | point in view we studied the secondary and tertiary structure of two TaGR proteins (TaGR1-D -A showed the best PDB hit with the GR of Bartonella henselae ( 3O0H ). The predicted C- |
| 10 | 3m1x | 3gp3 | https://pdfs.semanticscholar.org/b88b/677bceb020a7b157a866e774007d27e673e9.pdf | Expanding molecular modeling and design tools to non-natural sidechains. | 2012 | D Gfeller, O Michielin, V Zoete - J Comput Chem. 2012 Jul 5;33(18):1525-35. | Supplementary Figures 1JBO, 1KTP, 1PHN, 1QGW, 1XF6, 1XG0, 2BV8, 2C77, 2V8A, 2VJH, 2VJT, 3BRP, 3DBJ, 3O18, 3O2C |