We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DV0 | 2022 | 0 |
| 7TMV | 2022 | 0 |
| 8EES | 2022 | 0 |
| 7TMG | 2022 | 0 |
| 7TMF | 2022 | 0 |
| 8EGL | 2022 | 0 |
| 7TMD | 2022 | 0 |
| 4YWN | 2015 | 0 |
| 4Z0T | 2015 | 0 |
| 8EGM | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3jst | 4e98 | http://escholarship.org/uc/item/6kt7h3f4.pdf | Elucidation of genes of unknown function in alpha carboxysome operons: acRAF, BMVs and carbon regulatory PII proteins. | 2014 | NM Wheatley - 2014 - escholarship.org | ... B) Structural alignment of acRAF to PCD from Toxoplasma gondii (PDB 2V6T). T. gondii PCD is colored green. C) Structural alignments of active sites among five PCDs shown in green (PDB IDs: 1DC0, 2EBB, 2V6T, 3JST, 4C45). acRAF is shown in magenta. ... |
| 2 | 3jst | - | http://www.jbc.org/content/early/2014/01/23/jbc.M113.531236.short | Structure and identification of a pterin dehydratase-like protein as a RuBisCO assembly factor in the alpha-carboxysome | 2014 | NM Wheatley, CD Sundberg, SD Gidaniyan? - Journal of Biological Chemistry 2014 - ASBMB | ... diagram. Coordinates and structure factors have been deposited with the PDB ID code 4LOW. ... carboxysome). Data deposition - Atomic coordinates and diffraction data for acRAF have been deposited in the PDB with ID 4LOW. ... |
| 3 | 6tys | 6u1t | https://www.sciencedirect.com/science/article/pii/S1476927125000143 | Molecular modelling and optimization of a high-affinity nanobody targeting the nipah virus fusion protein through in silico site-directed mutagenesis | 2025 | NMO Odchimar, ANG Dulay, FL Orosco- Computational Biology and, 2025 - Elsevier | Nipah virus (NiV) is a re-emerging zoonotic pathogen with a high mortality rate and no effective treatments, prompting the search for new antiviral strategies. While conventional antiviral ... Protein datasets of experimentally described monoclonal antibody (mAb; PDB ID: 7K14) and fragment antigen-binding antibodies (FAbs; PDB ID: 6T3F, 6U1T, 6TYS, 7UOP, 7UPA, 7UPB, 7UPD, 7UPK, and 7UP9) in complex with NiV pre-fusion protein (NiVF) and NiV pre-fusion apoprotein (PDB ID: 5EVM) were retrieved from the Prot |
| 4 | 7ki4 | 7ki6 | https://link.springer.com/article/10.1007/s11030-024-10932-7 | From antibiotic to antiviral: computational screening reveals a multi-targeting antibiotic from Streptomyces spp. against Nipah virus fusion proteins | 2024 | NMO Odchimar, MAB Macalalad, FL Orosco- Molecular Diversity, 2024 - Springer | , a crystal structure was used ( PDB ID: 5EVM). structure , homology modeling was performed using SWISSMODEL with the following PDB structure files as reference structures : 7KI4 and |
| 5 | 7jzl | - | https://www.nature.com/articles/s41598-025-12444-2 | Fusion of SARS-CoV-2 neutralizing LCB1 peptide with Bacillus amyloliquefaciens RNase improves antiviral efficacy | 2025 | NN Kostin, TV Bobik, EV Konovalova- Scientific Reports, 2025 - nature.com | structural interaction with the trimeric spike ( PDB : 7JZL ). Its in vivo efficacy has been demonstrated in multiple studies, including in transgenic mouse models 14 . Moreover, its compact |
| 6 | 3ek2 | - | http://www.freepatentsonline.com/y2017/0088822.html | Crystalline Structure of FABI from Burkholderia Pseudomallei | 2017 | NR Krishnamurthy - US Patent , 2017 - freepatentsonline.com | ... Analysis of X-Ray Structure of BpmFabI. ... The structural superposition showed an rms deviationof 1.047 , 0.87 and 1.07 respectively for Bpm (256 Ca atoms; PDB; 3EK2), Ec (251 Caatoms; PDB; 4JQC) and ScFabI (242 Ca atoms; PDB; 4FS3) crystal structures. ... |
| 7 | 3k9g | 3s6l, 3oib, 3km3, 3njb, 3o2e | https://scripts.iucr.org/cgi-bin/paper?nz5010 | Multivariate estimation of substructure amplitudes for a single-wavelength anomalous diffraction experiment | 2023 | NS Pannu, P Skubk- Acta Crystallographica Section D: Structural, 2023 - scripts.iucr.org | The model-building performance is judged by the fraction of the PDB -deposited model backbone that is `correctly built'. A residue is considered to be correctly built if its C position is at |
| 8 | 3rd5 | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4213187/ | Comparative Study on Sequence–Structure–Function Relationship of the Human Short-chain Dehydrogenases/Reductases Protein Family | 2014 | NTN Tang, L Le - Evolutionary bioinformatics online, 2014 - ncbi.nlm.nih.gov | ... structures within each group were compared with each other and the selected structure was the ...GROUPS, PDB CODE AND NAME OF REPRESENTATIVE STRUCTURES. ... 4, 3rd5 chain A, aputative uncharacterized oxidoreductase protein from Mycobacterium Paratuberculosis. ... |
| 9 | 4odj | - | https://pubs.rsc.org/en/content/articlehtml/2019/cc/c9cc07807j | Nucleoside-modified AdoMet analogues for differential methyltransferase targeting | 2020 | NV Cornelissen, F Michailidou, F Muttach- Chemical, 2020 - pubs.rsc.org | 39 In addition, we tested the putative wildtype MAT from Cryptosporidium hominis (ChMAT) that had been crystallized by the Seattle Structural Genomics Center for Infectious Disease (SSGCID) but was otherwise ChMAT ( PDB : 4ODJ ) and hMAT2a ( PDB : 5A1G) have 59 |
| 10 | 6q04 | - | https://www.biorxiv.org/content/10.1101/2021.02.09.430519v1.abstract | Transformations, Comparisons, and Analysis of Down to Up Protomer States of Variants of the SARS-CoV-2 Prefusion Spike Protein Including the UK Variant B. 1.1. 7 | 2021 | O Basidas, D Kokron, CE Henze- bioRxiv, 2021 - biorxiv.org | Clustal Omega uses a structure guided hidden Markov model (HMM) for multiple sequence alignment. Sequences were obtained directly from the PDB files across four different corona viruses SARS-CoV (6ACD) [14], SARS-CoV-2 (6VSB) [10], MERS-CoV ( 6Q04 ) [20], and |