Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Structure	Year released	#citations
8G0U	2023	0
5I92	2016	0
8G0V	2023	0
8SA7	2023	0
8SA8	2023	0
5IDY	2016	0
5IF2	2017	0
5IF5	2017	0
5IF7	2017	0
5IF8	2017	0

Manually reviewed citations

#	PDB	Additional SSGCID structures cited	Link	Title	Year	Citation	Highlighted abstract
1	6cja	-	https://www.nature.com/articles/s41589-025-01954-9	Terminal alkyne formation by a pyridoxal phosphate-dependent enzyme	2025	JB Hedges, JA Marchand, C Calv-Tusell- Nature Chemical, 2025 - nature.com	PDB 6CJA , we then superposed the structure of the second adjacent monomer from the PDB 6CJA catalytic dimer onto the structure residues present in the structure of the N terminus of
2	7k45	-	https://www.nature.com/articles/S41591-021-01294-w	Resistance of SARS-CoV-2 variants to neutralization by monoclonal and serum-derived polyclonal antibodies	2021	RE Chen, X Zhang, JB Case, ES Winkler, Y Liu- Nature medicine, 2021 - nature.com	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused the global COVID-19 pandemic. Rapidly spreading SARS-CoV-2 variants may jeopardize newly introduced antibody and vaccine countermeasures. Here, using monoclonal antibodies (mAbs), animal ... Structures of the SARS-CoV-2 RBD in complex with a representative neutralizing antibody from (a) class 1 (S2E12, PDB: 7K45), or (b) class 2 (S309, PDB: 6WPS).
3	7n8i	-	https://www.nature.com/articles/s41592-022-01645-6	Improved AlphaFold modeling with implicit experimental information	2022	TC Terwilliger, BK Poon, PV Afonine, CJ Schlicksup- Nature, 2022 - nature.com	To emulate the situation where no similar structure is present in the PDB , templates from the PDB were not used. For each protein we then examined the four AlphaFold models
4	4hr2	-	https://www.nature.com/articles/s41594-020-00530-0	Structures of radial spokes and associated complexes important for ciliary motility	2021	M Gui, M Ma, E Sze-Tu, X Wang, F Koh- Nature Structural &, 2021 - nature.com	In motile cilia, a mechanoregulatory network is responsible for converting the action of thousands of dynein motors bound to doublet microtubules into a single propulsive waveform. Here, we use two complementary cryo-EM strategies to determine structures of the major
5	6bfu	-	https://www.nature.com/articles/s41594-020-0478-5	A thermostable, closed SARS-CoV-2 spike protein trimer	2020	X Xiong, K Qu, KA Ciazynska, M Hosmillo- Nature Structural &, 2020 - nature.com	Structures of the disulfide-stabilized and non-disulfide-stabilized proteins reveal distinct closed and locked conformations of the S trimer with the target cell, and is a dominant target of the immune system 4 . S protein is trimeric and has two distinct structural statesprefusion ... porcine deltacoronavirus (PDCoV, a deltacoronavirus, PDBID: 6BFU). S proteins are structurally aligned based on S2. S protein trimers from all 4 genera of
6	6q04	-	https://www.nature.com/articles/s41594-020-0479-4	Controlling the SARS-CoV-2 spike glycoprotein conformation	2020	R Henderson, RJ Edwards, K Mansouri- Nature structural &, 2020 - nature.com	d, The SARS-2 (left, PDB 6VXX) and MERS (right, PDB 6Q04 ) structures , each with a single protomer depicted in cartoon of the gj angles and dihedrals overlaid on an alignment between a SARS-2 down (cartoon structure with black centroids and lines; PDB 6VXX) and
7	5udf	-	https://www.nature.com/articles/s41594-021-00573-x	Structural basis for bacterial lipoprotein relocation by the transporter LolCDE	2021	X Tang, S Chang, K Zhang, Q Luo, Z Zhang- Nature Structural &, 2021 - nature.com	Advertisement. Advertisement. Nature Structural & Molecular Biology. View all journals; Search; My Account Login. Explore content; Journal information; Publish with us Structural basis for bacterial lipoprotein relocation by the transporter LolCDE
8	3l56	-	https://www.nature.com/articles/s41598-017-11625-y	Characterization of influenza A viruses with polymorphism in PB2 residues 701 and 702	2017	AWH Chin, NKC Leong, JM Nicholls, LLM Poon- Scientific Reports, 2017 - nature.com	Correlation between the structural predictions and the polymerase activities in 293T cells at 37 C. In order to anticipate the effect of PB2-701 and 702 mutations on surface charge distributions, protein models of PB2-701 and 702 mutants ( PDB ID: 3CW4, 3L56 and 2GMO) were
9	3sbx	-	https://www.nature.com/articles/s41598-017-12471-8	A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis	2017	R Bhagavat, HB Kim, CY Kim, TC Terwilliger- Scientific reports, 2017 - nature.com	a given ligand recognition, and (d) sensitive methods are required to compare structural motifs against binding sites 33 and combine them into a workflow to obtain structure -based function a large-scale analysis of 4,766 ATP and other NTP binding proteins from PDB and have
10	3f9i	-	https://www.nature.com/articles/s41598-017-13978-w	Engineering a short-chain dehydrogenase/reductase for the stereoselective production of (2 S, 3 R, 4 S)-4-hydroxyisoleucine with three asymmetric centers	2017	X Shi, T Miyakawa, A Nakamura, F Hou, M Hibi- Scientific reports, 2017 - nature.com	The structure of HILDH-NADH was determined using the molecular replacement method performed by the program MOLREP on the CCP4 suite using the structure of 3-ketoacyl-(acyl-carrier-protein) reductase (PDB code, 3F9I; sequence identity, 34%) as the initial model.