We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6WS6 | 2020 | 22 |
| 6WSA | 2020 | 2 |
| 6WSB | 2020 | 1 |
| 6WWD | 2020 | 0 |
| 6X79 | 2020 | 22 |
| 6X9F | 2020 | 0 |
| 6X9N | 2020 | 0 |
| 6XDH | 2020 | 10 |
| 6XDK | 2020 | 1 |
| 6XEP | 2020 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4mpq | - | https://ir.canterbury.ac.nz/handle/10092/13558 | Structural Characterisation of members of the DHDPS/NAL subfamily of proteins | 2017 | C MacDonald - 2017 - ir.canterbury.ac.nz | 2HMC A. tumefaciens HypD 4MPQ B. melitensis HypD p(r) Pair distribution function plot pdb Protein data base This information is displayed using espript software (Robert and Gouet 2014) with secondary structure of E. coli DHDPS being shown along the top |
| 2 | 4n0w | - | http://peds.oxfordjournals.org/content/early/2015/05/17/protein.gzv026.short | Conserved water molecules in bacterial serine hydroxymethyltransferases | 2015 | T Milano, ML Di Salvo, S Angelaccio… - … Design and Selection, 2015 - Oxford Univ Press | ... After PDB scrutiny, 11 structures were selected on the basis of better resolution, the absenceof point ... (2003) and Mustata and Briggs (2004) who analyzed the structural role of ... MD simulationswere carried out on the dimer in the apo form of the structure 4N0W corresponding to ... |
| 3 | 4n0w | 4oh7, 4o5m, 4o5o, 4oo0, 4m0j, 4m9a | http://onlinelibrary.wiley.com/doi/10.1002/prot.25274/full | Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in doubleblind predictions during the | 2017 | GA Khoury, J Smadbeck, CA Kieslich - Proteins: Structure, , 2017 - Wiley Online Library | ... The interface will e-mail the refined structure with a unique link to visualize the initial and refinedstructures in a Jmol environment, as well as analyze the changes in key structural features whichinclude relative GDT_TS, dDFIRE energy, and number of clashes. ... |
| 4 | 4n5f | 4m9a | http://www.mdpi.com/1420-3049/22/10/1722 | Binding Direction-Based Two-Dimensional Flattened Contact Area Computing Algorithm for ProteinProtein Interactions | 2017 | BS Kang, GK Pugalendhi, KJ Kim- Molecules, 2017 - mdpi.com | ... To determine the interactions between protein structures , they used the solvent-excluded surface (SES) for each protein structure , measured the distance between point pairs from two solvent-excluded ... PISA is used to select the dimeric structure in the PDB (Protein Data Bank ... Table 1. Computed binding directions and area ratios. 4N5F 0.681050 |
| 5 | 4n5f | - | http://www.jbc.org/content/293/5/1702.short | Structural basis for substrate specificity of methylsuccinyl-CoA dehydrogenase, an unusual member of the acyl-CoA dehydrogenase family | 2018 | T Schwander, R McLean, J Zarzycki, TJ Erb- Journal of Biological, 2018 - ASBMB | The structure was solved using molecular replacement using the Phaser-MR and AutoBuild programs of the Phenix software package (31). The structure of a putative acyl-CoA dehydrogenase (PDB code 4N5F; 26.5% sequence identity) served as a search model for the molecular replacement. |
| 6 | 4nbr | - | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.0c01343 | PSIQUE: Protein Secondary Structure Identification on the Basis of Quaternions and Electronic Structure Calculations | 2021 | F Adasme-Carreno, J Caballero- Journal of Chemical, 2021 - ACS Publications | Inf. Model. 2021, 61, 4, 1789-1800. ADVERTISEMENT. RETURN TO ISSUEPREVComputational Chemis...Computational ChemistryNEXT. Journal Logo. PSIQUE: Protein Secondary Structure Identification on the Basis of Quaternions and Electronic Structure Calculations |
| 7 | 4nbr | - | https://onlinelibrary.wiley.com/doi/abs/10.1107/S2059798318005612 | MRREX: molecular replacement by cooperative conformational search and occupancy optimization on lowaccuracy protein models | 2018 | JJ Virtanen, Y Zhang- Acta Crystallographica Section D, 2018 - Wiley Online Library | et al., 2016, 2017; Shrestha & Zhang, 2015), MR-REX takes advan- tage of this fact by predicting possible inaccurate segments of the structural model and Input and output data The input to MR-REX is a set consisting of structure -factor data, a structure file in PDB format and |
| 8 | 4nbr | - | https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bio... | SCOT: Rethinking the Classification of Secondary Structure Elements | 2019 | T Brinkjost, C Ehrt, O Koch, P Mutzel- Bioinformatics, 2019 - academic.oup.com | -bulge which leads to a kinked (highlighted in green) -helical structure in 4nbr @ pdb (chain A for SCOT and SHAFT for the structure pair 4k20@ pdb and 5cna@ pdb results from based assignment methods except for SHAFT are the most robust ones regarding structure quality |
| 9 | 4ncx | - | http://ieeexplore.ieee.org/abstract/document/8035078/ | Parallelization of large-scale Drug-Protein binding experiments | 2017 | A Makris, D Michail, I Varlamis- & Simulation (HPCS, 2017 - ieeexplore.ieee.org | ... pair of proteins 4M10 (the structure of Murine Cyclooxygenase-2 Complex with Isoxicam) and 3KQZ (the structure of a ... random motifs malaria motifs 4fm5 42 6cox 27 3kwb 7 4ncx 23 1cjb 25 1nnu 10 1d3z 3 1cmx ... correspond to protein chains, only the distinct PDB IDs were kept. ... |
| 10 | 4ncx | 4olf, 4q15, 4wi1 | https://www.nature.com/articles/s41467-022-32630-4 | Elucidating the path to Plasmodium prolyl-tRNA synthetase inhibitors that overcome halofuginoneresistance | 2022 | MA Tye, NC Payne, C Johansson, K Singh- Nature, 2022 - nature.com | Encouraged by these results, we evaluated the reported co-crystal structure of compound 2 bound to HsProRS ( PDB : 5VAD) more closely and noted that the cyclohexyl substituent ... Ligands were docked against the ProRS structures reported here (PDB 6T7K, 7QB7, 7QC1, and 7QC2) and previously (for HsProRS, PDB: 5VAD, 4HVC, 4K86, 4K87, 4K88, and 5V58; for PfcProRS, PDB 4Q15, 4NCX, 4YDQ, 4OLF, 5IFU, and 4WI1). |