We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8G0U | 2023 | 0 |
| 5I92 | 2016 | 0 |
| 8G0V | 2023 | 0 |
| 8SA7 | 2023 | 0 |
| 8SA8 | 2023 | 0 |
| 5IDY | 2016 | 0 |
| 5IF2 | 2017 | 0 |
| 5IF5 | 2017 | 0 |
| 5IF7 | 2017 | 0 |
| 5IF8 | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3m1x | - | http://www.sciencedirect.com/science/article/pii/S1046202315002078 | Protein structure prediction guided by crosslinking restraints–A systematic evaluation of the impact of the crosslinking spacer length | 2015 | T Hofmann, AW Fischer, J Meiler, S Kalkhof - Methods, 2015 - Elsevier | ... Based on the structure of calmodulin (PDB entry 2ksz) the average Cβ–Nz, Cβ–Cγ, Cβ–Cδ,Cβ–N H2 , and Cβ–S G distances ... Structure, Uniprot, Resolution [Å], Molecular weight [Da],Sequence length [aa], Lys portion [%], α-helix [%], β-sheet ... 3m1x, C4LXT9, 1.2, 15882, 138, 7, ... |
| 2 | 3qbp | 3qh8 | http://dl.acm.org/citation.cfm?id=2213792 | Protein surface characterization using an invariant descriptor | 2011 | ZA Deeb, DA Adjeroh, BH Jiang - Journal of Biomedical Imaging, 2011 - dl.acm.org | ... 1. Introduction The Protein Data Bank (http://www.pdb.org/pdb/home/ home.do) (PDB) currently has more than 3000 protein struc- tures classified as uncharacterized or as proteins of unknown function. This is about 5% of the total structures in PDB. ... |
| 3 | 5br9 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.26545 | Protein target highlights in CASP15: Analysis of models by structure providers | 2023 | LT Alexander, J Durairaj- Proteins: Structure, 2023 - Wiley Online Library | structures superimposed on Ferrichrome-bound FhuA ( PDB ( PDB 1QFG, salmon) and FhuA from the target ( PDB 8B14, Red star: first resolved N-terminus of the different structures ... Structure of A. aeolicus TsaB. (A) The overlaid crystal structures of E. coli TsaB (PDB: 4YDU), T. maritima TsaB (PDB: 6N9A), S. typhimurium TsaB (PDB: 3ZET), P. s aeruginosa (PDB: 5BR9) |
| 4 | 5kak | - | https://books.google.com/books?hl=en&lr=&id=x6RMDwAAQBAJ&oi=fnd&pg=PR8&dq=%225KA... | Protein-protein and domain-domain interactions | 2018 | P Kangueane, C Nilofer - 2018 - books.google.com | 1.10) structures It is important to under- stand the physical and chemical features of amino acids to understand protein folding, structure , function, and 1.4 A covalent bond is illustrated using cysteine with corresponding bond length 1.5 Structural Motifs Proteins are made of |
| 5 | 3dpi | - | http://www.sciencedirect.com/science/article/pii/S1476927116301128 | Protein-protein interaction and molecular dynamics analysis for identification of novel inhibitors in Burkholderia cepacia GG4 | 2016 | M Gupta, R Chauhan, Y Prasad, G Wadhwa - Biology and Chemistry, 2016 - Elsevier | ... Homology based protein structure prediction employs submission of query protein sequenceto BLASTp against PDB database for identifying ... 3DPI, 2PZ8 and 1NSY. ... The dimensions of bindingspace on three dimensional structure of protein were identified in DockBlaster itself. ... |
| 6 | 3khp | - | https://link.springer.com/content/pdf/10.1186/s12866-020-01763-1.pdf | Proteinprotein interaction of Rv0148 with Htdy and its predicted role towards drug resistance in Mycobacterium tuberculosis | 2020 | G Bhargavi, S Hassan, S Balaji, SP Tripathy- BMC microbiology, 2020 - Springer | Rv0148 and Htdy interaction analysis The crystallographically determined structure of Htdy ( PDB code 3KHP ) and the predicted model structure of Rv0148 were used for docking using the ClusPro server b Ramachandran plot for the predicted model structure of Rv0148 |
| 7 | 4g67 | 4f3n | https://www.sciencedirect.com/science/article/pii/S2211124718311938 | Proteobacterial Origin of Protein Arginine Methylation and Regulation of Complex I Assembly by MidA | 2018 | UFS Hameed, O Sanislav, ST Lay, SJ Annesley- Cell reports, 2018 - Elsevier | (A) Secondary structure representation of the MidA crystal structure bound to SAH (E) Superimposition of MidA (green) onto the putative protein Q6N1P6 ( PDB : 1zkd) from R. palustris (orange) and ACR COG1565 ( PDB : 4g67 ) from B. thailandensis (purple); RMSD = 1.68 |
| 8 | 3h81 | 3myb | http://aem.asm.org/content/early/2015/07/07/AEM.01686-15.short | Pseudomonas aeruginosa Isohexenyl Glutaconyl-CoA Hydratase (AtuE) Is Upregulated in Citronellate-grown Cells and Belongs to the Crotonase Family | 2015 | N Poudel, J Pfannstiel, O Simon, N Walter… - Applied and …, 2015 - Am Soc Microbiol | ... Initial phases were obtained with 223 molecular replacement using PHASER (21). Two searchmodels were constructed 224 (PDB accession code: 3H81, 37.0% seq. ... The stereochemistry 235of the structure was validated with MOLPROBITY (24) and various tools in COOT. ... |
| 9 | 3ndn | - | http://digitalcommons.unl.edu/chemistrydiss/21/ | Purification of Lysine Decarboxylase: A Model System for PLP Enzyme Inhibitor Development and Study | 2011 | LC Zohner - 2011 - digitalcommons.unl.edu | ... This is inferred from the crystal structure of a bond phosphono-analogue of L-alanine (pdb 1BD0). ... contrast to 2.6 ?, for the aspartate oxygen-pyridine nitrogen in the crystal structure of ornithine decarboxylase from Lactobacillus (pdb ID 1ORD), hinting that hydrogen ... |
| 10 | 6nbo | - | https://www.sciencedirect.com/science/article/pii/S0269749120364927 | Purification, characterization, and catalytic mechanism of N-Isopropylammelide isopropylaminohydrolase (AtzC) involved in the degradation of s-triazine | 2021 | N Zhou, J Wang, W Wang, X Wu- Environmental Pollution, 2021 - Elsevier | The structural architecture of AtzC resembled that of cytosine deaminase in class III Purification and structural characterization of AtzE produced by the model bacterium Pseudomonas sp and substrate specificity of AtzC were studied, and the function, structure , and evolutionary |