We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DV0 | 2022 | 0 |
| 7TMV | 2022 | 0 |
| 8EES | 2022 | 0 |
| 7TMG | 2022 | 0 |
| 7TMF | 2022 | 0 |
| 8EGL | 2022 | 0 |
| 7TMD | 2022 | 0 |
| 4YWN | 2015 | 0 |
| 4Z0T | 2015 | 0 |
| 8EGM | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4lfy | - | https://www.sciencedirect.com/science/article/pii/S0141813019322287 | Pyrimidine biosynthesis in pathogensStructures and analysis of dihydroorotases from Yersinia pestis and Vibrio cholerae | 2019 | J Lipowska, CD Miks, K Kwon, L Shuvalova- International journal of, 2019 - Elsevier | As the first DHO structure ( PDB ID 1J79) was deposited in 2001, structural information was not available to guide the DHO classification proposed in 1999. In 2014, an updated phylogenetic tree based on structure -guided sequence alignments using structures available for nine .. Table 1 Burkholderia cenocepacia 4LFY 2013 Structural genomics (SSGCID) |
| 2 | 3enk | - | https://www.nature.com/articles/s41598-019-47591-w | Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum | 2019 | YW Nam, M Nishimoto, T Arakawa, M Kitaoka- Scientific reports, 2019 - nature.com | Here, we focused on structural features of GalE from B. longum JCM1217 (bGalE) The main chain structure of bGalE is similar to those of bacterial and eukaryotic GalEs. C RMSD values (distance cutoff = 2.0 ) of the UDP-GlcNAc complex with hGalE ( PDB ID 1HZJ, ... We built a reliable homology model of BLLJ_1592 (GQME = 0.72 and QMEAN = −2.34) using the SWISS-MODEL server45 with an unpublished structure of GalE from Burkholderia pseudomallei (PDB ID: 3ENK, sequence identity = 42.3%) as a template |
| 3 | 4dhe | 6n38 | https://www.annualreviews.org/doi/abs/10.1146/annurev-micro-020518-115420 | Assembly and subcellular localization of bacterial type VI secretion systems | 2019 | J Wang, M Brodmann, M Basler- Annual review of microbiology, 2019 - annualreviews.org | The TssM cytosolic domain is modeled after NTPase-like domain EngB ( PDB 4DHE ) followed by a helical extension modeled after DPY-30 f ) Structure of the PDB 3ZRJ) binding to the TssC positioned in the same orientation as in panel e. Abbreviation: PDB , PDB , Protein Data |
| 4 | 4f40 | 4h51, 4h7p, 4f2n | https://www.preprints.org/manuscript/201902.0122 | Leishmania Proteomics: An in Silico Perspective | 2019 | CA Padilla, MJ Alvarez, A Combariza - 2019 - preprints.org | PDB -codes but same structure and proteins with equal structures but elucidated from dif thase from L. major (PGF; PDB ID: 4F40 ) is involved in the lipid metabolic pathway, acting FPPS protein ( PDB ID: 4JZX) is potently inhibited by bisphosphonates in the trypanosomatid |
| 5 | 4f2n | - | https://scripts.iucr.org/cgi-bin/paper?or5020 | Crystal structure of an iron superoxide dismutase from the pathogenic amoeba Acanthamoeba castellanii | 2019 | O Dao, K Asaithambi, BK Na, KH Lee- Section F: Structural Biology, 2019 - scripts.iucr.org | et al., 2014), P. falciparum ( PDB entry 2bpi; Boucher et al., 2006) and L. major ( PDB entry 4f2n ; Phan et al., 2015) and of MnSOD from Homo sapiens ( PDB entry 5vf9 architecture of AcFeSOD is similar to those of other Fe/MnSODs, including the E. coli FeSOD structure (Fig |
| 6 | 4egq | 4eg0, 4egj | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.14976 | Burkholderiapseudomallei dalaninedalanine ligase; detailed characterisation and assessment of a potential antibiotic drug target | 2019 | L DazSez, LS Torrie, SP McElroy, D Gray- The FEBS, 2019 - Wiley Online Library | An apo-BpDdl structure ( PDB code 4EGQ ) has been determined by the Seattle Structural Genomics Center for Infectious Disease. Electron and difference density maps in the ATP binding sites were inspected to ascertain if a ligand might be present |
| 7 | 4f0l | - | http://search.proquest.com/openview/fef1d24d7e6ff92856571d1305df8aa5/1?pq-origsi... | Structural and Biochemical Studies of C. jejuni Agmatine Deiminase, E. coli Guanine Deaminase, and S. cerevisiae Guanine Deaminase | 2019 | R Shek - 2019 - search.proquest.com | to uric acid by xanthine oxidase. Figure 1.4. Structure of triose phosphate isomerase. PDB : 6B2W. The beta strands that make up the TIM barrel are shown in red. Page 24. 11 catalyze deamination reactions, the two families differ substantially in their structural architectures. 27 |
| 8 | 4e98 | 4iyq | https://riunet.upv.es/handle/10251/117999 | Bases estructurales de la sealizacin y regulacin por nitrgeno y procesos asociados. | 2019 | L Tremio Agull - 2020 - riunet.upv.es | PDB : banco de datos de protenas (Protein Data Bank: https://www.rcsb.org/ pdb /home/home. do) PEG 49 Captulo 1: Studies on cyanobacterial protein PipY shed light on structure , potential functions Functional and structural studies in bacteria ----- 117 |
| 9 | 3sbx | - | https://www.sciencedirect.com/science/article/pii/S1097276519302606 | (p) ppGpp Regulates a Bacterial Nucleosidase by an Allosteric Two-Domain Switch | 2019 | YE Zhang, RL Brentsen, T Fuhrer, U Sauer, K Gerdes- Molecular cell, 2019 - Elsevier | marinum showing similarity to the PpnN core domain and determined in the presence of adenosine monophosphate (AMP) ( PDB : 3SBX , Figure S3 Vibrio cholerae and Idomarina baltica, at a similar position to the phosphate of AMP in the M. marinum structure , suggesting that |
| 10 | 4hvt | - | https://pubs.acs.org/doi/abs/10.1021/acs.biochem.9b00031 | Crystal Structure and Conformational Dynamics of Pyrococcus furiosus Prolyl Oligopeptidase | 2019 | K Ellis-Guardiola, H Rui, RL Beckner, P Srivastava- Biochemistry, 2019 - ACS Publications | Crystal Structure and Conformational Dynamics of Pyrococcus furiosus Prolyl Oligopeptidase While extensive structural characterization of bacterial and mammalian POPs has been performed, no structures for archaeal POPs have been reported |