We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4HDT | 2012 | 0 |
| 8EGN | 2022 | 0 |
| 8EK7 | 2022 | 0 |
| 8EWA | 2022 | 0 |
| 8F8U | 2022 | 0 |
| 8FBM | 2023 | 0 |
| 8FI3 | 2022 | 0 |
| 8FI4 | 2022 | 0 |
| 8FI5 | 2022 | 0 |
| 5F9Y | 2016 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3fvb | - | http://dx.plos.org/10.1371/journal.pone.0068421 | Factors Controlling the Redox Potential of ZnCe6 in an Engineered Bacterioferritin Photochemical 'Reaction Centre' | 2013 | A Mahboob, S Vassiliev, PK Poddutoori, A van der Est? - PloS one, 2013 - dx.plos.org | ... In addition, this aminoacid is conserved among ferritins from several organisms (PDB ID: 2FKZ, 3E1M, 3IS8, 3FVB) suggesting that it serves to regulate heme potential. Replacing it with an aliphatic residue is expected to eliminate this negative effect. ... |
| 2 | 5u25 | - | https://www.mdpi.com/2077-0383/8/12/2117 | FAD/NADH Dependent Oxidoreductases: From Different Amino Acid Sequences to Similar Protein Shapes for Playing an Ancient Function | 2019 | L Trisolini, N Gambacorta, R Gorgoglione- Journal of Clinical, 2019 - mdpi.com | Here, we present a structural comparative analysis showing that the investigated flavoprotein oxidoreductases have a highly similar overall structure , although the investigated Similarly, AIF-crystallized structure hosts a FAD and two NADH molecules (4bur. pdb , [26]) and |
| 3 | 2n6t | 2n6w, 2n6x, 2n6s | https://www.sciencedirect.com/science/article/pii/S0022283617304680 | F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly | 2017 | S Jain, T Schlick- Journal of molecular biology, 2017 - Elsevier | Table 1. List of 50 RNA PDB files whose 3D structures were generated in this paper. PDB , Residues, Molecule, Structure . 2M4W, 17, HEV genome bulge, Hairpin, internal loop 2N6T , 42, CssA mRNA thermometer top, Hairpin, internal loops |
| 4 | 3r2v | - | http://dx.plos.org/10.1371/journal.pone.0081027.g001 | Extreme Evolutionary Conservation of Functionally Important Regions in H1N1 Influenza Proteome | 2013 | S Warren, XF Wan, G Conant, D Korkin - PloS one, 2013 - dx.plos.org | ...Table 3. Coverage and sequential similarity of protein templates. Template Template subtype Template similarity, % Residues covered 3R2V (A) H3N2 93 538-720 |
| 5 | 3inn | 4ed4 | http://pubs.acs.org/doi/abs/10.1021/ci500553a | Extraction of Protein Binding Pockets in Close Neighborhood of Bound Ligands Makes Comparisons Simple Due to Inherent Shape Similarity | 2014 | T Krotzky, T Rickmeyer, T Fober… - Journal of chemical …, 2014 - ACS Publications | ... To set up a more challenging task with respect to conformational and structural diversity, we ... serverPISCES of the Dunbrack lab(35) was employed, which kept only PDB structures that agreed ... thesequence identity does not exceed 25%, the method of structure determination is ... |
| 6 | 3h7f | - | https://scripts.iucr.org/cgi-bin/paper?rr5190 | Extending the scope of coiled-coil crystal structure solution by AMPLE through improved ab initio modelling | 2020 | JMH Thomas, RM Keegan, DJ Rigden- Section D: Structural, 2020 - scripts.iucr.org | This led to the solution of five new structures ( PDB entries 2v71, 3cvf, 3h7f , 3mqc and 3trt) in As an example, PDB entry 3mqc failed to solve using default models (Fig 3b), through an ensemble that included substantial common helical structure with deviation at either end (Fig |
| 7 | 3qdf | - | http://scripts.iucr.org/cgi-bin/paper?hc5132 | Expression, purification, crystallization and preliminary crystallographic analysis of Cg1458: a novel oxaloacetate decarboxylase from Corynebacterium glutamicum | 2011 | T Ran, Y Wang, D Xu, W Wang - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2011 - scripts.iucr.org | ... was collected at 1.9 ? resolution using synchrotron radiation on beamline BL17U of SSRF, Shanghai, China. Structure-solution attempts by molecular replacement were successful with PDB entries 3qdf or 2dfu as the template. ... |
| 8 | 3oj7 | - | http://scripts.iucr.org/cgi-bin/paper?rl5035 | Expression, purification, crystallization and preliminary X-ray crystallographic analysis of human histidine triad nucleotide-binding protein 2 (hHINT2) | 2013 | R Dolot, A Wlodarczyk, GD Bujacz? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... above 15% similarity to a given hHINT2 sequence and BALBES, and five of them were used for further calculations: PDB entries 1kpf ... 404, 627-638.] ), 3oj7 (HIT family protein from Entamoeba histolytica; 40.2% similarity; Seattle Structural Genomics Center for Infectious Disease ... |
| 9 | 3grk | - | http://www.opus4.kobv.de/opus4-fau/files/2717/Dissertation_PB_Unibib.pdf | Expression und Mutagenese von VEP1-kodierten Progesteron-5β-Reduktasen aus pharmazeutisch interessanten Angiospermen | 2012 | P Bauer - 2012 - opus4.kobv.de | ... Parallel wurden mit Hilfe der „Superposition“-Funktion der Wincoot Software (II.2.5) in silico die Cosubstrat-Bindetasche der DlP5βR jeweils mit der von verschiedenen NADHabhängigen SDR-Enzymen überlagert (PDB: 2ztl, 3d3w, 3grk,.. |
| 10 | 6q05 | - | https://www.sciencedirect.com/science/article/pii/S1093326320305672 | Exploring the intrinsic dynamics of SARS-CoV-2, SARS-CoV and MERS-CoV spike glycoprotein through normal mode analysis using anisotropic network | 2021 | S Majumder, D Chaudhuri, J Datta, K Giri- Journal of Molecular Graphics, 2021 - Elsevier | 2.1. Protein structure retrieval. All the X-ray crystal structures for SARS-CoV-2, SARS-CoV and MERS-CoV S proteins in the lying state were taken from protein data bank [21]. The corresponding PDB IDs are 6VXX, 5X58 and 6Q05 respectively [11,22,23] |