We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6XDK | 2020 | 1 |
| 6XEP | 2020 | 0 |
| 6XK2 | 2020 | 1 |
| 6XMY | 2020 | 4 |
| 6XNQ | 2020 | 1 |
| 6XR5 | 2020 | 0 |
| 6XRS | 2020 | 1 |
| 7JFN | 2020 | 1 |
| 7JFZ | 2020 | 2 |
| 7JP4 | 2021 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4mei | 4o3v, 4jf8, 4lso, 4nhf, 4kz1 | https://www.frontiersin.org/articles/10.3389/fmolb.2021.642606/full | Structural and Biochemical Analysis of OrfG: The VirB8-like Component of the Conjugative Type IV Secretion System of ICESt3 From Streptococcus | 2021 | J Cappele, A Mohamad Ali- Frontiers in molecular, 2021 - frontiersin.org | The first step of structure comparison was conducted with both DALI (Holm and Sander, 1995) and and Henrick, 2004) to fetch a complete list of VirB8 structures (26 PDB entries 16 structures was conserved (2cc3, 3ub1, 3wz3, 3wz4, 4akz, 4ec6, 4jf8, 4kz1, 4lso, 4mei , 4nhf, 4o3v |
| 2 | 4mei | 4nhf, 4o3v, 4kz1, 4lso, 4jf8 | https://link.springer.com/chapter/10.1007/978-3-319-75241-9_2 | Structural and Molecular Biology of Type IV Secretion Systems | 2017 | L Terradot, C Berg, G Waksman- Type IV Secretion in Gram-Negative, 2017 - Springer | 1.2 Composition of T4SSs. X-ray crystallography, nuclear magnetic resonance (NMR), and more recently electron microscopy have been successfully used to provide insights into the structure of T4SSs Plasmid or bacteria. PDB or EMDB ID 4KZ1,4JF8,4LSO, 4MEI ,4NHF m |
| 3 | 4mow | - | https://pubs.acs.org/doi/abs/10.1021/acscentsci.1c00519 | Discovery of SARS-CoV-2 Papain-like Protease Inhibitors through a Combination of High-Throughput Screening and a FlipGFP-Based Reporter Assay | 2021 | C Ma, MD Sacco, Z Xia, G Lambrinidis- ACS Central, 2021 - ACS Publications | Using the structure with PDB ID 7JRN as a template, we docked the potent analogues Jun9-53-2, Jun9-72-2, and Jun9-75-4 in the SARS-CoV-2 PL pro drug-binding site. The stability of |
| 4 | 4mow | - | https://microbialcellfactories.biomedcentral.com/articles/10.1186/s12934-016-059... | Anaerobic poly-3-D-hydroxybutyrate production from xylose in recombinant Saccharomyces cerevisiae using a NADH-dependent acetoacetyl-CoA reductase | 2016 | AM de las Heras - Microbial Cell , 2016 - microbialcellfactories.biomedcentral. | ... Since the crystal structures of these AARs were not available, protein structures were made ... protein sequence identity to the C. necator AAR whose crystal structure was used ... Both S. wolfei homology models (Swol_0651 modelled on PDB: 4MOW [27] and Swol_1910 modelled ... |
| 5 | 4mpq | - | https://ir.canterbury.ac.nz/handle/10092/13558 | Structural Characterisation of members of the DHDPS/NAL subfamily of proteins | 2017 | C MacDonald - 2017 - ir.canterbury.ac.nz | 2HMC A. tumefaciens HypD 4MPQ B. melitensis HypD p(r) Pair distribution function plot pdb Protein data base This information is displayed using espript software (Robert and Gouet 2014) with secondary structure of E. coli DHDPS being shown along the top |
| 6 | 4n0w | 4oh7, 4o5m, 4o5o, 4oo0, 4m0j, 4m9a | http://onlinelibrary.wiley.com/doi/10.1002/prot.25274/full | Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in doubleblind predictions during the | 2017 | GA Khoury, J Smadbeck, CA Kieslich - Proteins: Structure, , 2017 - Wiley Online Library | ... The interface will e-mail the refined structure with a unique link to visualize the initial and refinedstructures in a Jmol environment, as well as analyze the changes in key structural features whichinclude relative GDT_TS, dDFIRE energy, and number of clashes. ... |
| 7 | 4n0w | - | http://peds.oxfordjournals.org/content/early/2015/05/17/protein.gzv026.short | Conserved water molecules in bacterial serine hydroxymethyltransferases | 2015 | T Milano, ML Di Salvo, S Angelaccio… - … Design and Selection, 2015 - Oxford Univ Press | ... After PDB scrutiny, 11 structures were selected on the basis of better resolution, the absenceof point ... (2003) and Mustata and Briggs (2004) who analyzed the structural role of ... MD simulationswere carried out on the dimer in the apo form of the structure 4N0W corresponding to ... |
| 8 | 4n5f | 4m9a | http://www.mdpi.com/1420-3049/22/10/1722 | Binding Direction-Based Two-Dimensional Flattened Contact Area Computing Algorithm for ProteinProtein Interactions | 2017 | BS Kang, GK Pugalendhi, KJ Kim- Molecules, 2017 - mdpi.com | ... To determine the interactions between protein structures , they used the solvent-excluded surface (SES) for each protein structure , measured the distance between point pairs from two solvent-excluded ... PISA is used to select the dimeric structure in the PDB (Protein Data Bank ... Table 1. Computed binding directions and area ratios. 4N5F 0.681050 |
| 9 | 4n5f | - | http://www.jbc.org/content/293/5/1702.short | Structural basis for substrate specificity of methylsuccinyl-CoA dehydrogenase, an unusual member of the acyl-CoA dehydrogenase family | 2018 | T Schwander, R McLean, J Zarzycki, TJ Erb- Journal of Biological, 2018 - ASBMB | The structure was solved using molecular replacement using the Phaser-MR and AutoBuild programs of the Phenix software package (31). The structure of a putative acyl-CoA dehydrogenase (PDB code 4N5F; 26.5% sequence identity) served as a search model for the molecular replacement. |
| 10 | 4nbr | - | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.0c01343 | PSIQUE: Protein Secondary Structure Identification on the Basis of Quaternions and Electronic Structure Calculations | 2021 | F Adasme-Carreno, J Caballero- Journal of Chemical, 2021 - ACS Publications | Inf. Model. 2021, 61, 4, 1789-1800. ADVERTISEMENT. RETURN TO ISSUEPREVComputational Chemis...Computational ChemistryNEXT. Journal Logo. PSIQUE: Protein Secondary Structure Identification on the Basis of Quaternions and Electronic Structure Calculations |