We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SAD | 2023 | 0 |
| 5K9F | 2016 | 0 |
| 5K9Z | 2016 | 0 |
| 5KEU | 2016 | 0 |
| 5KF0 | 2016 | 0 |
| 5KOB | 2016 | 0 |
| 5KWV | 2016 | 0 |
| 5T3Y | 2016 | 0 |
| 5T5Q | 2016 | 0 |
| 8SAE | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4xfd | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2018.1552199 | Validation of NAD synthase inhibitors for inhibiting the cell viability of Leishmania donovani: In silico and in vitro approach | 2019 | H Mandal, S Vijayakumar, S Yadav- Structure and, 2019 - Taylor & Francis | Skip to Main Content |
| 2 | 3tcq | - | http://scholar.google.com/https://bioinformation.net/012/97320630012192.pdf | Molecular docking based screening of compounds against VP40 from Ebola virus | 2016 | HMA El-Din, SA Loutfy, N Fathy, MH Elberry - , 2016 - bioinformation.net | ... Figure 1: A 3D structure cartoon representation of the matrix protein VP40 from Ebola virus ofSudan (PDB ID: 3TCQ) as viewed in JSmol (JavaScript). (http://www.rcsb.org) mention PDB IDused; Software used: Describe the salient features of the protein in 2 statements. ... |
| 3 | 5i7w | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/jeu.12834 | Characterization of Cystathionine Synthase TtCbs1 and Cysteine Synthase TtCsa1 Involved in Cysteine Biosynthesis in Tetrahymena thermophila | 2020 | H Lv, J Xu, T Bo, W Wang- Journal of Eukaryotic Microbiology, 2020 - Wiley Online Library | TtCsa1 has more than 30% sequence identities with B. abortus CS ( PDB ID: 5JIS) (Dharavath et al. 2017), B. suis CS ( PDB ID: 5I7W ), and L. major CS ( PDB ID: 4AIR) (Fyfe et al. 2012), and we modeled the overall structure of TtCsa1 with these crystal structures |
| 4 | 3rih | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0176141 | Functional genetic variant of WW domain-containing oxidoreductase (WWOX) gene is associated with hepatocellular carcinoma risk | 2017 | HL Lee, HL Cheng, YF Liu, MC Chou, SF Yang - PloS one, 2017 - journals.plos.org | ... Strick consensus amino acids in the putative active centers of compact structural units are shown: the key amino acids of active ... of human WWOX using the SWISSMODEL server based on M. abscessus short chain dehydrogenase or reductase crystal structure ( PDB ID: 3RIH ). ... |
| 5 | 6nb7 | - | https://www.nature.com/articles/s41598-020-73820-8 | Hot spot profiles of SARS-CoV-2 and human ACE2 receptor protein protein interaction obtained by density functional tight binding fragment molecular orbital | 2020 | H Lim, A Baek, J Kim, MS Kim, J Liu, KY Nam- Scientific reports, 2020 - nature.com | the hot spot region, we also performed the same calculation with RBD-SARS-CoV-1/antibody complexes (five experimental structural data All experimental structures calculated in this work are summarized in Table 1. All missing side chains were filled using Prime implemented |
| 6 | 4iuj | 4p9a | http://search.proquest.com/openview/e042d9cdc035342db038fc10db68a8fe/1?pq-origsi... | Computer-Aided Drug Discovery and Protein-Ligand Docking | 2015 | H Li - 2015 - search.proquest.com | ... In addition to PAC-PB1N structures, two apo crystal structures of PAC in the absence of PB1 have been reported recently [322]. The first is a 1.9Å resolution structure of H1N1 PAC (PDB ID: 4IUJ). The second is a 2.2Å resolution structure of H7N9 PAC (PDB ID: 4P9A)... |
| 7 | 4qgr | 4lc3 | http://onlinelibrary.wiley.com/doi/10.1002/prot.25192/full | Templatebased modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30 | 2016 | H Lee, M Baek, GR Lee, S Park - Proteins: Structure, , 2016 - Wiley Online Library | ... The structural similarity of oligomer templates to the experimental structure of the target (releasedafter the ... T90, 0.927/2OGA, 0.927/2OGA(0.903/4LC3), 0.921/4QGR(0.915/3B8X). ... with the givendimeric state was not available in the PDB, but a dodecamer structure (PDB ID: 3RCO ... |
| 8 | 3r1i | - | http://www.jbc.org/content/early/2019/06/17/jbc.RA119.009390.short | Structural and biochemical characterization of 20-hydroxysteroid dehydrogenase from Bifidobacterium adolescentis strain L2-32 | 2019 | HL Doden, RM Pollet, SM Mythen, Z Wawrzak- Journal of Biological, 2019 - ASBMB | replacement with the structure of an SDR from Mycobacterium marinum ( PDB : 3R1I ) and refined indicate these alanine substitutions did not sig- nificantly affect secondary structural elements (Fig extended N-terminus is important for second- ary and quaternary structure In both |
| 9 | 3oks | - | https://link.springer.com/protocol/10.1007/978-1-4939-7366-8_4 | YASARA: A Tool to Obtain Structural Guidance in Biocatalytic Investigations | 2018 | H Land, MS Humble- Protein Engineering, 2018 - Springer | File > Load > yob file from Your working directory. File > Load > Pdb file from internet. To align the structures [31] 1.531. 386 g. 29.8. 3OKS h. 1.702. 717. 27.8 g Monomer. h Crystal structure (444 residues) of a 4-aminobutyrate transaminase from Mycobacterium smegmatis [34] |
| 10 | 3q8n | - | https://d-nb.info/1080209204/34 | Biocatalytic Synthesis of Amino Alcohols | 2015 | H Kohls - 2015 - d-nb.info | ATA Amine transaminase PDB Protein data bank Nevertheless, the structural scope of amines accessible with high yields and high optical pu- rities by these methods is Ver- nakalant, a 1,2-amino alcohol used as antiarrhythmic drug (see Figure 1 for the structure of Vernakalant |