We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SAD | 2023 | 0 |
| 5K9F | 2016 | 0 |
| 5K9Z | 2016 | 0 |
| 5KEU | 2016 | 0 |
| 5KF0 | 2016 | 0 |
| 5KOB | 2016 | 0 |
| 5KWV | 2016 | 0 |
| 5T3Y | 2016 | 0 |
| 5T5Q | 2016 | 0 |
| 8SAE | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4wec | - | https://www.sciencedirect.com/science/article/pii/S0045653518315108 | Quantitative proteomic and transcriptional analyses reveal degradation pathway of -hexachlorocyclohexane and the metabolic context in the actinobacterium | 2018 | PE Sineli, HM Herrera, SA Cuozzo, JSD Costa- Chemosphere, 2018 - Elsevier | Template crystal structures , obtained from PDB data bank (RCSB- PDB ), were 3A76 for dehydrochlorinase, 4HZG for haloalkane dehalogenase and 4WEC for short-chain alcohol dehydrogenase. Protein structures were visualized using PyMol |
| 2 | 6tys | - | https://www.nature.com/articles/s41467-024-48601-w | A potent Henipavirus cross-neutralizing antibody reveals a dynamic fusion-triggering pattern of the G-tetramer | 2024 | P Fan, M Sun, X Zhang, H Zhang, Y Liu, Y Yao- Nature, 2024 - nature.com | Top (a) and side (b) views of the crystal structure of the NiV BD G HD /1E5 Fab complex. G HD /EB2 ( PDB ID: 2VSM) and G HD /m102.3 ( PDB ID: 6CMI) structures ... Prediction of G-F interactions based on Discovery Studio The GHD (PDB ID: 2VSM) and sF (PDB ID: 6TYS) proteins were docked using the Dock Proteins protocol (ZDOCK) in Discovery Studio 4.5. |
| 3 | 6wpt | - | https://www.ncbi.nlm.nih.gov/pmc/articles/pmc8144490/ | Synthesis and cytotoxic activity of novel Indole derivatives and their in silico screening on spike glycoprotein of SARS-CoV-2 | 2021 | P Gobinath, DA Ponnusamy Packialakshmi- Frontiers in molecular, 2021 - ncbi.nlm.nih.gov | molecular protein crystal structure of spike glycoprotein of SARS-CoV-2 PDB ID 6WPT The ligand preparation module optimized the ligand 3D structure of selected molecules to remove molecular interaction analysis with selected small molecules of (1c) with 6WPT protein was |
| 4 | 3krs | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24001/full | Asparagine and glutamine differ in their propensities to form specific side chain-backbone hydrogen bonded motifs in proteins | 2012 | PG Vasudev, M Banerjee? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... acts as the hydrogen bond acceptor. In the available data set of 24 TIM crystal structures, there are three examples with Asn at 119, all of which (PDB IDs:1O5X, 3KRS, 1AW1) exhibit similar motifs. Interestingly, three examples with Gln at position 119 illustrated in ... |
| 5 | 3ndn | - | http://pubs.acs.org/doi/abs/10.1021/bi201090n | Characterization of the Side-Chain Hydroxyl Moieties of Residues Y56, Y111, Y238, Y338, and S339 as Determinants of Specificity in E. coli Cystathionine beta-Lyase | 2011 | PH Lodha, SM Aitken - Biochemistry, 2011 - ACS Publications | ... figure Scheme 2. Observed Contacts of the PLP-AVG External Aldimine Active Site of eCBL a. a The dotted lines represent putative hydrogen bond distances of ?3.3 ? between heteroatoms. The image was constructed using ChemDraw and PDB entry 1CL2.(3). ... |
| 6 | 3hwi | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.260/full | Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains | 2009 | P H?nzelmann, JU Dahl, J Kuper, A Urban? - Protein Science, 2009 - Wiley Online Library | ... The tandem-domain rhodaneses from Thermus thermophilus (PDB entry 1uar), Mycobacterium tuberculosis (PDB entry 3hwi), Azotobacter vinelandii (Av_RhdA, PDB entry 1e0c) and Bos taurus (Rhodbov, PDB entry 1boi) with Z-scores of ?30 and rms deviations of about 2.2 ? ... |
| 7 | 5el0 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25869 | An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45. | 2019 | PI Koukos, J Roel-Touris, F Ambrosetti, C Geng- bioRxiv, 2019 - biorxiv.org | For the server submission of target 134, we modelled the protein on PDB entry 4d07 and the peptide on 4d07 and 4qh8, threading the target sequence on the peptide structure of the templates 5el0 and followed similar strategies as for target 134. Template-based targets |
| 8 | 3sds | - | http://rodrigo.uv.es/handle/10550/25294 | Estructura - funcion - especificidad en el ambito de las transcarbamilasas: la putrescina transcarbamilasa | 2012 | P Ilacqua, L Mariano - 2012 - rodrigo.uv.es | ... PCR: Reacci?n en cadena de la polimerasa (Polymerase Chain Reaction) PEG: Polietil?n glicol pfOTC: L-ornitina transcarbamilasa de Pyrococcus furiosus PDB: Banco de datos de prote?nas (Protein Data Bank) PTC: Putrescina transcarbamilasa Page 13. ... |
| 9 | 3r2v | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2361/abstract | Structural templates for modeling homodimers | 2013 | PJ Kundrotas, IA Vakser, J Janin - Protein Science, 2013 - Wiley Online Library | ... (3sb9). 37 The other four exceptions (3r2v, 3ra5, 3qlm, 4dz2) are likely to be monomers ... Science 338:1042- 1046. 4. Berman H, Henrick K, Nakamura H, Markley JL (2007) The worldwide ProteinData Bank (wwPDB): ensuring a single, uniform archive of PDB data. ... |
| 10 | 3rr2 | - | https://link.springer.com/article/10.1007/s13205-019-1572-4 | Insights into multifaceted activities of CysK for therapeutic interventions | 2019 | P Joshi, A Gupta, V Gupta- 3 Biotech, 2019 - Springer | PDB ID (References) 3RR2 (Baugh et al A recent study where a natural A241V variant of S. flexneri CysE has unstable quaternary assembly and reduced activity, suggests transient dissociation of quaternary structure of CysE to be another regulatory mechanism for cysteine |