We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SAD | 2023 | 0 |
| 5K9F | 2016 | 0 |
| 5K9Z | 2016 | 0 |
| 5KEU | 2016 | 0 |
| 5KF0 | 2016 | 0 |
| 5KOB | 2016 | 0 |
| 5KWV | 2016 | 0 |
| 5T3Y | 2016 | 0 |
| 5T5Q | 2016 | 0 |
| 8SAE | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ix6 | - | https://www.nature.com/articles/s41598-019-48940-5 | Analysis of mutations leading to para-aminosalicylic acid resistance in Mycobacterium tuberculosis | 2019 | B Pandey, S Grover, J Kaur, A Grover- Scientific reports, 2019 - nature.com | crystal structures of the ThyA enzyme in Brucella melitensis (PDBID: 3IX6 ), M. tuberculosis 3QJ7) 20 , Enterococcus faecalis ( PDB IF: 6QYA), and Escherichia coli ( PDB ID: 1AXW Comparative analysis of the binding free energy, secondary structure elements, and free energy |
| 2 | 3hzu | 3hwi | https://www.nature.com/articles/s41598-019-53069-6 | Mycobacterium tuberculosis CysA2 is a dual sulfurtransferase with activity against thiosulfate and 3-mercaptopyruvate and interacts with mammalian cells | 2019 | AN Meza, CCN Cambui, ACR Moreno, MR Fessel- Scientific reports, 2019 - nature.com | dimensional structures of M. tuberculosis CysA2 ( PDB code 3HIW, yellow), CysA3 ( PDB code 3AAY, red) and SseA ( PDB code 3HZU , blue) Based on the available three-dimensional structure of CysA2, we performed a comparison with putative orthologues studied in the |
| 3 | 3sbx | - | https://www.nature.com/articles/s41598-019-53171-9 | A LONELY GUY protein of Bordetella pertussis with unique features is related to oxidative stress | 2019 | F Moramarco, A Pezzicoli, L Salvini, R Leuzzi- Scientific reports, 2019 - nature.com | first resorted to a theoretical approach. This involved overlapping a model of BP1253 with a monomer of the type-I LOG protein of M. marinum co-crystallized with AMP (MmLOG, PDB 3SBX ) 14,19 . BP1253 was modeled on a |
| 4 | 5eqz | - | https://www.nature.com/articles/s41598-019-53830-x | Membrane directed expression in Escherichia coli of BBA57 and other virulence factors from the Lyme disease agent Borrelia burgdorferi | 2019 | KE Robertson, CD Truong, FM Craciunescu, PL Chiu- Scientific reports, 2019 - nature.com | All available structures from the genus Borrelia represent proteins expressed without a membrane Towards elucidating structure and function of these critical proteins, we directed translocation of to the outer membrane, Another criterion was the lack of structures in the PDB. RevA has a structure in the PDB33, a 1.80 Å crystal structure (accession no. 5EQZ, unpublished [J.K. Yano, A.H. Sullivan, J. Abendroth, D.D. Lorimer, and T.E. Edwards]), which is of the soluble domain that was expressed in the c |
| 5 | 6wps | - | https://www.nature.com/articles/s41598-020-71748-7 | Analysis of the SARS-CoV-2 spike protein glycan shield reveals implications for immune recognition | 2020 | OC Grant, D Montgomery, K Ito, RJ Woods- Scientific reports, 2020 - nature.com | The 3D structures show that the protein surface is extensively shielded from antibody recognition by glycans, with the notable exception of the ACE2 receptor Here we examine the structure of the SARS-CoV-2 envelope spike (S) protein that mediates host cell infection, with a. ... However, a closer examination also indicates a contraction between the 3D glycoform model and the observed binding of the neutralizing antibody S309 (PDB ID 6WPS). |
| 6 | 3qi6 | 6cja | https://www.nature.com/articles/s41598-020-71756-7 | Catalytic specificity of the Lactobacillus plantarum cystathionine -lyase presumed by the crystallographic analysis | 2020 | Y Matoba, M Noda, T Yoshida, K Oda, Y Ezumi- Scientific Reports, 2020 - nature.com | The reverse transsulfuration pathway, which is composed of cystathionine -synthase (CBS) and cystathionine -lyase (CGL), plays a role to synthesize l-cysteine using l-serine and the sulfur atom in l-methionine. A plant-derived lactic acid bacterium Lactobacillus plantarum SN35N |
| 7 | 6nb7 | - | https://www.nature.com/articles/s41598-020-73820-8 | Hot spot profiles of SARS-CoV-2 and human ACE2 receptor protein protein interaction obtained by density functional tight binding fragment molecular orbital | 2020 | H Lim, A Baek, J Kim, MS Kim, J Liu, KY Nam- Scientific reports, 2020 - nature.com | the hot spot region, we also performed the same calculation with RBD-SARS-CoV-1/antibody complexes (five experimental structural data All experimental structures calculated in this work are summarized in Table 1. All missing side chains were filled using Prime implemented |
| 8 | 6nb6 | 6nb7 | https://www.nature.com/articles/s41598-020-74715-4 | Molecular docking study of potential phytochemicals and their effects on the complex of SARS-CoV2 spike protein and human ACE2 | 2020 | A Basu, A Sarkar, U Maulik- Scientific reports, 2020 - nature.com | Every coronavirus comprises four structural proteins namely spike, envelope, nucleocapsid and membrane proteins Similarly, PDB ID 6M17 shows the presence of sodium-dependent neutral amino acid transporter B(O)AT1 in its structure |
| 9 | 3ujh | - | https://www.nature.com/articles/s41598-020-75650-0 | When a foreign gene meets its native counterpart: computational biophysics analysis of two PgiC loci in the grass Festuca ovina | 2020 | Y Li, S Mohanty, D Nilsson, B Hansson, K Mao- Scientific reports, 2020 - nature.com | F. ovina. Using simulated native-state ensembles, we examine the structural properties and binding tightness of the dimers. In addition, we investigate their ability to withstand dissociation when pulled by a force. Our results |
| 10 | 5vp5 | 3enn | https://www.nature.com/articles/s41598-021-86400-1 | Insights into Acinetobacter baumannii fatty acid synthesis 3-oxoacyl-ACP reductases | 2021 | EM Cross, FG Adams, JK Waters, D Arago- Scientific reports, 2021 - nature.com | Treatments for 'superbug' infections are the focus for innovative research, as drug resistance threatens human health and medical practices globally. In particular, Acinetobacter baumannii (Ab) infections are repeatedly reported as difficult to treat due to increasing antibiotic resistance |