We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7JV4 | 2021 | 6 |
| 7JV6 | 2021 | 14 |
| 7JVA | 2021 | 25 |
| 7JVC | 2021 | 27 |
| 7JW0 | 2021 | 42 |
| 7JWK | 2020 | 2 |
| 7JX3 | 2020 | 60 |
| 7JXC | 2020 | 5 |
| 7JXD | 2020 | 4 |
| 7JXE | 2020 | 8 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4o2d | - | http://dx.plos.org/10.1371/journal.pone.0113568.g009 | Biochemical and Structural Characterization of Mycobacterial Aspartyl-tRNA Synthetase AspS, a Promising TB Drug Target | 2014 | SS Gurcha, V Usha, JAG Cox, K Fütterer, KA Abrahams… - PloS one, 2014 - dx.plos.org | ... The corresponding loop in E. coli AspRS is 11 amino acid residues shorter (Figure 7). Anapo-structure of Ms-AspS has recently been deposited in the PDB (entry 4O2D), in which thisloop assumes a very different conformation, forming a 2-turn α-helix and folding back ... |
| 2 | 4o2d | - | http://scripts.iucr.org/cgi-bin/paper?nw5044 | Crystal structure of the N-terminal anticodon-binding domain of the nondiscriminating aspartyl-tRNA synthetase from Helicobacter pylori | 2017 | C Songsiriritthigul, S Suebka, CJ Chen - Section F: Structural , 2017 - scripts.iucr.org | ... 4a), similar to the positions of the Pro82 residue in the S. tokodaii ND- AspRS structure (Sato etal., 2007). ... Structural comparison of ND-AspRS1104 from H. pylori with those from M. smegmatis(PDB entry 4o2d; Baugh et al., 2015) and P. aeruginosa (PDB entry 4wj4 ... |
| 3 | 4o3v | 4lso, 4mei, 4jf8, 4kz1, 4nhf | http://www.nature.com/srep/2015/150603/srep10912/full/srep10912.html | Molecular and structural analysis of Legionella DotI gives insights into an inner membrane complex essential for type IV secretion | 2015 | T Kuroda, T Kubori, XT Bui, A Hyakutake, Y Uchida… - Scientific reports, 2015 - nature.com | ... (PDB ids 4JF8, 4KZ1, 4LSO, 4MEI, and 4NHF) and Richettsia typhi (4O3V) were published in PDB database. The arrangement of the VirB8 secondary structure isessentially the same as that of DotI C except for α3 and α5 (Fig. ... |
| 4 | 4o3v | 4nhf, 4lso, 4kz1 | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4840375/ | VirB8-like protein TraH is crucial for DNA transfer in Enterococcus faecalis | 2016 | C Fercher, I Probst, V Kohler - Scientific , 2016 - ncbi.nlm.nih.gov | ... A structure-based homology search revealed that TraH is related to proteins of the VirB8 family,which all exhibit a ... PDB code 4NHF, 14% sequence identity), Bartonella quintana (PDB code 4LSO,6% sequence identity), Rickettsia typhi (PDB code 4O3V, 19% sequence ... |
| 5 | 4o3v | - | https://jcheminf.biomedcentral.com/articles/10.1186/s13321-019-0360-9 | Improved algorithms for quantifying the near symmetry of proteins: complete side chains analysis | 2019 | I Tuvi-Arad, G Alon- Journal of cheminformatics, 2019 - jcheminf.biomedcentral.com | model of allostery (also referred to as the symmetry model) [5]. Synthesizing a symmetric structure requires less is a characteristic of many protein structures [7]. Searching the Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB ) [8, 9] for |
| 6 | 4o5h | - | http://www.sciencedirect.com/science/article/pii/S0003986117300462 | Structure and biochemistry of phenylacetaldehyde dehydrogenase from the Pseudomonas putida S12 styrene catabolic pathway | 2017 | AG Crabo, B Singh, T Nguyen, S Emami - Archives of Biochemistry , 2017 - Elsevier | ... The closest structural homolog to NPADH is sheep liver aldehyde dehydrogenase ALDH1 (PDBID: 1BXS), which catalyzes the conversion of retinal to retinoic ... In a homologous PADH structure from Burkholderia cenocepacia J2315 (BcPADH) (PDB ID: 4O5H), which was recently solved by the Seattle Structural Genomics Consortium and has 49% identity and 65% similarity to PADH, this loop contains the same number of amino acids as NPADH and adopts a different orientation (Fig. 2C)... |
| 7 | 4o5h | 4o6r, 4lih, 4u3w, 3ek1, 3i44 | http://www.ppgeq.propesp.ufpa.br/ARQUIVOS/dissertacoes/2017/PPGEQ-2017/Fabio%20B... | ESTUDO COMPUTACIONAL DA ENZIMA ALDEHYDE DEHYDROGENASE DE BIXA ORELLANA (URUCUM) E DOS LIGANTES ALDEÍDO DE BIXINA E NORBIXINA SOB A INFLUÊNCIA DO COFATOR NAD. | 2017 | Fábio Bruno Silva de Souza - ppgeq.propesp.ufpa.br | Therefore, the 3D structure of the PDB Banco de Dados de Protenas (Protein Data Bank) RMN Ressonncia Magntica Nuclear FASTA Arquivo RCSB Site de investigao de Tecnologias para Bioinformtica Estrutural (Research Collaboratory for Structural Bioinformatics) G |
| 8 | 4o5m | 3u0i | https://zaguan.unizar.es/record/135847 | Flavoenzymes in Microbial Systems: Analysis of Structure-Function Relationships | 2024 | MI Minjarez Saenz, MM Medina Trullenque - zaguan.unizar.es | Esta Tesis Doctoral se plante con objeto de mejorar nuestra comprensin de los mecanismos de accin especficos de especie en sistemas dependientes de flavoenzimas como |
| 9 | 4o5o | - | https://academic.oup.com/peds/article-abstract/doi/10.1093/protein/gzab008/62691... | A fragment-based protein interface design algorithm for symmetric assemblies | 2021 | J Laniado, K Meador, TO Yeates- Protein Engineering, Design, 2021 - academic.oup.com | The expansive database of known protein structures provides valuable empirical frameworks for The growing focus on secondary structure associations motivates an attempt to bring by precomputing common proteinprotein fragment configurations from known structural data |
| 10 | 4o5o | - | https://pubs.acs.org/doi/abs/10.1021/acs.biochem.7b01186 | Engineering Erg10 Thiolase from Saccharomyces cerevisiae as a Synthetic Toolkit for the Production of Branched-Chain Alcohols | 2018 | P Torres-Salas, V Bernal, F Lopez-Gallego- Biochemistry, 2018 - ACS Publications | Using a combined computational/experimental approach, and guided by structural information, we have studied the potential of thiolases to with novel properties, the naturally occurring metabolism of microorganisms is not always sufficient to obtain any desired structure |