We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5TVK | 2016 | 0 |
| 5U1P | 2016 | 0 |
| 8SBY | 2023 | 0 |
| 8SBZ | 2023 | 0 |
| 3GNQ | 2009 | 0 |
| 5U2A | 2016 | 0 |
| 5U2I | 2017 | 0 |
| 5U4N | 2016 | 0 |
| 5U8P | 2017 | 0 |
| 5UAI | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3r9r | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2018.0422 | Structure-guided fragment-based drug discovery at the synchrotron: screening binding sites and correlations with hotspot mapping | 2019 | SE Thomas, P Collins, RH James- of the Royal, 2019 - royalsocietypublishing.org | purine biosynthesis in maintaining the viability of cells and differences in the structural architecture of bacterial The crystals are similar to those of a previously determined structure of MabPurC with a monomer in the asymmetric unit (figure 1b) ( PDB 3R9R , Seattle Structural |
| 2 | 3rd5 | - | https://www.mdpi.com/2073-4352/9/10/533 | Trial Direct Phasing Calculation of A Thyroid Hormone Receptor Alpha Structure (4LNW) | 2019 | M Jiang, H He, WP Su- Crystals, 2019 - mdpi.com | It is worth mentioning that 3RD5 is a test structure with the lowest solvent content that we have successfully applied the direct method to. 4. Methodology After locating the two ligands, MJ and HH were informed that the test structure has the PDB code 4LNW |
| 3 | 2lbb | 2l4b | https://arxiv.org/abs/1901.00991 | Physical Folding Codes for Proteins | 2019 | X Ma, C Hou, L Shi, L Li, J Li, L Ye, L Yang- arXiv preprint arXiv, 2019 - arxiv.org | 15 Soares, CM, Teixeira, VH & Baptista, AM Protein Structure and Dynamics in Nonaqueous Solvents: Insights from Nature Structural Biology 10, 980, doi:10.1038/nsb1203-980 (2003 JL The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data |
| 4 | 3sbx | - | https://www.nature.com/articles/s41598-019-53171-9 | A LONELY GUY protein of Bordetella pertussis with unique features is related to oxidative stress | 2019 | F Moramarco, A Pezzicoli, L Salvini, R Leuzzi- Scientific reports, 2019 - nature.com | first resorted to a theoretical approach. This involved overlapping a model of BP1253 with a monomer of the type-I LOG protein of M. marinum co-crystallized with AMP (MmLOG, PDB 3SBX ) 14,19 . BP1253 was modeled on a |
| 5 | 3ief | 3m4s, 3mqw, 3m1x | https://repositorioinstitucionaluacm.mx/jspui/bitstream/123456789/86/3/Alma%20Ma... | Caracterizacin de la protena TV-PSP1 y su posible participacin en la degradacin del RNAm de tvcp39 en Trichomonas vaginalis | 2019 | AML Villalobos Osnaya - 2019 - repositorioinstitucionaluacm.mx | Tabla 4. Expresin de molculas en presencia y ausencia de Fe2+24 Tabla 5. Cdigos de PDB de protenas cristalizadas de la familia PSP26 structure of Tv-PSP1 with a molecular weight of 40.5 kDa. The secondary structure -- The table actually has an error for the 3ief organism :P |
| 6 | 3s99 | - | https://www.sciencedirect.com/science/article/pii/S037811191930160X | Identification and characterization of ABC transporters for carbohydrate uptake in Thermus thermophilus HB8 | 2019 | M Chandravanshi, A Sharma, PD Gupta, SK Mandal- Gene, 2019 - Elsevier | substantiate the relationship of TTHV089 with XBPs, its three-dimensional tertiary structure was predicted All the programs utilized XBP from E. coli (EcXBP, PDB id: 3M9W, open Further, the structural homology search using the predicted model of TTHV089 shows that apart |
| 7 | 4j3g | - | https://scholarworks.sjsu.edu/etd_projects/829/ | PREDICTING SWITCH-LIKE BEHAVIOR IN PROTEINS USING LOGISTIC REGRESSION ON SEQUENCE-BASED DESCRIPTORS | 2019 | B Strauss - 2019 - scholarworks.sjsu.edu | set. Validated residue binary assignments of 0 (no change in secondary structure ) and 1 (change in secondary structure ) were determined (DSSP) from 3D X-ray structures for sets of virtually identical chains crystallized under different conditions |
| 8 | 3ixc | - | https://repository.kaust.edu.sa/handle/10754/652899 | Activity Assessment of a Halophilic -carbonic Anhydrase from the Red Sea Brine Pool Discovery Deep | 2019 | A Vancea - 2019 - repository.kaust.edu.sa | 25 CA_D 3R1W 3TIO 2FKO 3R3R 3IXC 3VNP 1XHD 4N27 1QRG 3KWC Figure 7: Structural homology study - structural overlay of CA_D monomer with reported PDB structures Table 2: List of the PDB structure used in the structure homology study together with the organism |
| 9 | 5j92 | - | https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.14847 | Preferential catabolism of the (S)enantiomer of the herbicide napropamide mediated by the enantioselective amidohydrolase SnaH and the dioxygenase Snpd in | 2019 | J Huang, D Chen, J Jiang- Environmental microbiology, 2019 - Wiley Online Library | molecular docking. A homology model of Snpd was built based on chain A of the 5J92 template (sharing 39% identity with Snpd; PDB code; resolution: 1.95 ). A Snpd- KG-FeO complex structure was established in a similar manner as SnaH-Zn-H2O. The |
| 10 | 4xgi | - | https://link.springer.com/content/pdf/10.1007/s10989-019-09886-4.pdf | Homology Modeling and Molecular Docking Studies of Glutamate Dehydrogenase (GDH) from Cyanobacterium Synechocystis sp. PCC 6803 | 2019 | O Haghighi, S Davaeifar, HS Zahiri, H Maleki- International Journal of, 2019 - Springer | aLigand name in structure : NAD-507 Docking pose number Reference ligand in crystallography structure (ligand name and pdb code) NADH NADPH AKG Glutamate 1V9L 1HWYa 5GUD 5IJZ 1HWY 4XGI 6DHM 3AOG Pose 01 4.57 3.48 5.74 5.75 2.22 2.11 1.72 1.58 |