We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7JZL | 2020 | 28 |
| 7JZM | 2020 | 24 |
| 7JZN | 2020 | 12 |
| 7JZU | 2020 | 38 |
| 7K43 | 2021 | 65 |
| 7K45 | 2020 | 32 |
| 7K46 | 2020 | 1 |
| 7K47 | 2020 | 1 |
| 7K4L | 2022 | 3 |
| 7K4N | 2020 | 38 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4o6r | - | http://scripts.iucr.org/cgi-bin/paper?s1399004715004228 | Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus | 2015 | AS Halavaty, RL Rich, C Chen, JC Joo… - … Section D: Biological …, 2015 - scripts.iucr.org | ... DALI (Holm & Rosenstro¨ m, 2010) analysis found a putative ALDH from Burkholderia cenocepacia (PDB entry 4o6r; Seattle Structural Genomics Center for Infectious Disease, unpublished work) to be the closest structural homolog of SaBADH (Z-score of 59.6; r.m.s.d. of 1.3 A ° ; 38% sequence homology)... |
| 2 | 4o6r | 4kna, 3i44, 3ek1 | http://www.sciencedirect.com/science/article/pii/S0009279715000253 | Amino acid residues that affect the basicity of the catalytic glutamate of the hydrolytic aldehyde dehydrogenases | 2015 | RA Muñoz-Clares, L González-Segura… - Chemico-Biological Interactions, 2015 - Elsevier | ... groups as sticks with carbon atoms colored depending on the structure, oxygen in ... Family organism,enzyme (PDB code), pH crystal c, pK a, Hydrogen bond d ... Burkholderia cenocepacia, BCAM0469,AMP-complex (4O6R), 6.5, 7.42, Cys302↓ Gly270↓/Lys178↓ Glu399↑ Glu476 ... |
| 3 | 4o6r | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5324060/ | Evolutionary, computational, and biochemical studies of the salicylaldehyde dehydrogenases in the naphthalene degradation pathway | 2017 | B Jia, X Jia, KH Kim, ZJ Pu, MS Kang, CO Jeon - Scientific Reports, 2017 - ncbi.nlm.nih.gov | ... using the Modeller 9 program 28 based on the crystal structures of SALDpp (PDB ID: 4JZ6) andother aldehyde dehydrogenases (PDB ID: 4FR8, 4O6R, 4NMK, 2O2P, and ... The three-dimensionalstructure of SALDan was modeled using the Modeller 9 software program 28 . ... |
| 4 | 4odj | - | http://jb.oxfordjournals.org/content/160/6/355.short | Characterization and redox regulation of Plasmodium falciparum methionine adenosyltransferase | 2016 | J Pretzel, M Gehr, M Eisenkolb, L Wang - Journal of , 2016 - Jpn Biochemical Soc | ... The structure of PfalMAT was modelled according to the crystal structures of MAT2A fromHomo sapiens (PDB no. 2p02) and Cryptosporidium hominis (PDB no. 4odj) using theSWISS-MODEL automated comparative protein-modelling server (36). ... |
| 5 | 4odj | - | https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006483 | A benchmark driven guide to binding site comparison: An exhaustive evaluation using tailor-made data sets (ProSPECCTs) | 2018 | C Ehrt, T Brinkjost, O Koch- PLoS computational biology, 2018 - journals.plos.org | In parallel with the ever increasing number of available protein structures in the Protein Data Bank ( PDB )[1], various in silico techniques were developed to apply this structural knowledge[2]. In addition to molecular docking, structure -based pharmacophore searches, and |
| 6 | 4odj | 4ig6, 4kgn, 4h3z | https://iris.sissa.it/handle/20.500.11767/59211 | Static and dynamic properties of knotted biopolymers: from bulk to nanochannels and nanopores | 2017 | A Suma - 2017 - iris.sissa.it | ... Several pioneering experiments and structural surveys demonstrated that knots can appear in biopolymers such as RNA [7], proteins [8 ... PDB download (~105 protein chains) ... We have used the same cutoff distance to check if some structure , such as the cyclotide, had a cyclized ... |
| 7 | 4odj | - | https://pubs.rsc.org/en/content/articlehtml/2019/cc/c9cc07807j | Nucleoside-modified AdoMet analogues for differential methyltransferase targeting | 2020 | NV Cornelissen, F Michailidou, F Muttach- Chemical, 2020 - pubs.rsc.org | 39 In addition, we tested the putative wildtype MAT from Cryptosporidium hominis (ChMAT) that had been crystallized by the Seattle Structural Genomics Center for Infectious Disease (SSGCID) but was otherwise ChMAT ( PDB : 4ODJ ) and hMAT2a ( PDB : 5A1G) have 59 |
| 8 | 4odj | - | https://www.ncbi.nlm.nih.gov/pmc/articles/pmc6794121/ | Genomewide analysis of mode of action of the S-adenosylmethionine analogue sinefungin in leishmania infantum | 2019 | A Bhattacharya, M Sharma, C Pakkinathan, BP Rosen- Msystems, 2019 - ncbi.nlm.nih.gov | C (B) The human LCMT1-PP2AC structure is presented SNF is a structural analogue of S-adenosylmethionine (AdoMet), a key methyl group donor to a |
| 9 | 4odj | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3545 | CrossStrand Disulfides in the Hydrogen Bonding Site of Antiparallel sheet (aCSDhs): Forbidden Disulfides that are Highly Strained, Easily Broken | 2018 | NL Haworth, MJ Wouters, MO Hunter, L Ma- Protein, 2018 - Wiley Online Library | Examples include interleukin 36 receptor antagonist (PDB: 1md6) and the previously mentioned ML domains. Other aCSDhs span only short segments of sequence straddling a β‐hairpin (PDBs: 5bvw, 3fl7, 1htd, 3ngm, 4odj). |
| 10 | 4odj | - | https://scripts.iucr.org/cgi-bin/paper?no5145 | Structure of a critical metabolic enzyme: S-adenosylmethionine synthetase from Cryptosporidium parvum | 2019 | J Ohren, GF Parungao, RE Viola- Section F: Structural Biology, 2019 - scripts.iucr.org | Vagin & Teplyakov, 2010) with the structure of C. hominus MetK ( PDB entry 4odj ) as the ordered in the presence of substrates, is disordered and was not modeled in this structure to form functional tetramers with D2 or 222 symmetry, as illustrated by EcoMetK ( PDB entry 1p7l |