We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3RFQ | 2011 | 2 |
| 3RD8 | 2011 | 6 |
| 3RD7 | 2011 | 5 |
| 3RD5 | 2011 | 15 |
| 3R9T | 2011 | 2 |
| 3R9S | 2011 | 2 |
| 3R9R | 2011 | 7 |
| 3R9Q | 2011 | 0 |
| 3R9P | 2011 | 3 |
| 3R8C | 2011 | 7 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p0x | - | https://www.sciencedirect.com/science/article/pii/S0166685120300992 | Characterisation and structural analysis of glyoxylate cycle enzymes of Teladorsagia circumcincta | 2020 | S Umair, C Bouchet, N Palevich, HV Simpson- Molecular and Biochemical, 2020 - Elsevier | to compare the TciICL and TciMS protein sequences with deposited structures in the Protein Data Bank ( PDB ) Locations are shown of the C- and N-terminus in the predicted tertiary structure of TciICL C) and TciMS in salmon (F) within 4 of the superimposed 3P0X and 3S9Z |
| 2 | 3p0x | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1476-5381.2011.01629.x/full | Lifting the lid on GPCRs: the role of extracellular loops | 2012 | M Wheatley, D Wootten, MT Conner… - British journal of …, 2012 - Wiley Online Library | ... Family A GPCRs: ECL structural aspects. ... 2RH1); B, D3R (yellow; PDB accession 3PBL); C, A2A R (orange; PDB accession 2YDO); D, CXCR4 (green; PDB accession 3OE0). ... In contrast, theECL2 of the β 2 AR possess a radically different structure comprising a short α-helix that ... |
| 3 | 3oxk | - | http://scripts.iucr.org/cgi-bin/paper?hv9323 | Response to Errors in Crystal structure of HINT from Helicobacter pylori | 2016 | KF Tarique, S Devi, SA Abdul Rehman - Section F: Structural , 2016 - scripts.iucr.org | ... The confusion arises again from the various PDB entries where the same protein was namedas ... branch of the HIT family (http:// www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv ... has also beenidentified to contain purine nucleoside- and nucleotide- binding proteins' (3oxk; Lorimer et al ... |
| 4 | 3oxk | 3o0m, 3lb5, 3p0t, 3r6f | http://search.proquest.com/openview/a6bee6255f2ecb6acc21ab8e2dbd25bd/1?pq-origsi... | Structural Biology for Drug Design: Applications in Two Systems | 2016 | KM Maize - 2016 - search.proquest.com | ... Structurally, the purple HIT-like clade (4EGU, 3OXK) appears to be highly related to the known Hint proteins, whereas the remaining three HIT-like clades differ from the Hints by the addition of a long 12-15 residue C- terminal helix ... Sequence alignment alone fails to properly separate these two structural subclasses: those that draw the C-terminal helix from the same monomer (2EO4, 3LB5, 3P0T, 3O0M, 3NRD, 3OHE, 3I4S, and 3I24), and those that cross over to ... |
| 5 | 3oq8 | - | http://www.sciencedirect.com/science/article/pii/S1047847716300557 | Crystal structure and functional analysis of isocitrate lyases from Magnaporthe oryzae and Fusarium graminearum | 2016 | Y Park, Y Cho, YH Lee, YW Lee, S Rhee - Journal of structural biology, 2016 - Elsevier | ... The MoICL residues were selected based on the proposed structural and functional features ... In previous, unpublished work, we also observed nearly identical structural changes in Brucella melitensis ICL complexed with malonate (PDB 3OQ8). ... |
| 6 | 3ol3 | - | https://www.csbj.org/cms/10.1016/j.csbj.2020.11.051/attachment/ff440127-372b-492... | Supporting Information 2D Zernike polynomial expansion: finding the protein-protein binding regions | 2021 | E Milanettia, M Miottoa, L Di Rienzob, M Montic - csbj.org | comparison of protein regions that belong to different proteins, because they 35 remove the preliminary requirement of structural alignment. Moreover, the orthogonality of the |
| 7 | 3oks | 3r4t | http://scripts.iucr.org/cgi-bin/paper?tb5051 | Structures of a gamma-aminobutyrate (GABA) transaminase from the s-triazine-degrading organism Arthrobacter aurescens TC1 in complex with PLP and with its external aldimine PLP-GABA adduct | 2012 | H Bruce, A Nguyen Tuan? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... Acta Cryst. D66, 22-25.] ) with a monomer of the transaminase from Mycobacterium smegmatis (PDB entry 3oks ; 63% amino-acid sequence identity to A1R958; Seattle Structural Genomics Center for Infectious Disease, unpublished work) as a search model. ... |
| 8 | 3oks | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13293/full | Single active‐site mutants are sufficient to enhance serine: pyruvate α‐transaminase activity in an ω‐transaminase | 2015 | D Deszcz, P Affaticati, N Ladkau, A Gegel… - FEBS …, 2015 - Wiley Online Library | ... More distantly related ω-TAms identified in the structure alignments, such as ornithine-AT (PDBcode: 1OAT), 4-aminobutyrate-AT (PDB code: 3OKS and 1SFF), acetylornithine-AT (PDB code:2ORD), l-lysine-epsilon-AT (PDB code: 2CJG), β-phenylalanine-AT (PDB code ... |
| 9 | 3oks | - | https://link.springer.com/protocol/10.1007/978-1-4939-7366-8_4 | YASARA: A Tool to Obtain Structural Guidance in Biocatalytic Investigations | 2018 | H Land, MS Humble- Protein Engineering, 2018 - Springer | File > Load > yob file from Your working directory. File > Load > Pdb file from internet. To align the structures [31] 1.531. 386 g. 29.8. 3OKS h. 1.702. 717. 27.8 g Monomer. h Crystal structure (444 residues) of a 4-aminobutyrate transaminase from Mycobacterium smegmatis [34] |
| 10 | 3oj7 | - | http://scripts.iucr.org/cgi-bin/paper?rl5035 | Expression, purification, crystallization and preliminary X-ray crystallographic analysis of human histidine triad nucleotide-binding protein 2 (hHINT2) | 2013 | R Dolot, A Wlodarczyk, GD Bujacz? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... above 15% similarity to a given hHINT2 sequence and BALBES, and five of them were used for further calculations: PDB entries 1kpf ... 404, 627-638.] ), 3oj7 (HIT family protein from Entamoeba histolytica; 40.2% similarity; Seattle Structural Genomics Center for Infectious Disease ... |