We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5IXU | 2016 | 0 |
| 5IZ4 | 2016 | 0 |
| 8SAA | 2023 | 0 |
| 8SAB | 2023 | 0 |
| 8SAC | 2023 | 0 |
| 5JSC | 2016 | 0 |
| 8SAD | 2023 | 0 |
| 5K9Z | 2016 | 0 |
| 5KEU | 2016 | 0 |
| 5KF0 | 2016 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4dz4 | 5dle, 4q1t, 4pca, 5bq2, 4lgv, 5kak, 4ghk, 5udf, 4lgo, 3i3f, 3slg, 3swo, 3tk8, 3l0g, 3ld9, 3hm0, 3inn, 3t3w, 5w15, 3dah | https://link.springer.com/chapter/10.1007/978-981-10-7347-2_5 | Homo Multimer Protein Complexes | 2018 | P Kangueane, C Nilofer- Protein-Protein and Domain-Domain Interactions, 2018 - Springer | 3T3W, 3T94, 3VZD, 3WCM, 3WSG, 3WU4, 4BLP, 4BLQ, 4C01, 4C9S, 4D2E, 4DZ4 , 4FLN, 4FZQ Distribution of homo multimer protein complex structures at the protein data bank ( PDB ) Structure of a homo trimer glycosidase (1AM7) from enterobacteria phage lambda is shown |
| 2 | 4ot8 | - | https://pubs.acs.org/doi/abs/10.1021/acschembio.0c00753 | l-Threonine Transaldolase Activity Is Enabled by a Persistent Catalytic Intermediate | 2020 | P Kumar, A Meza, JM Ellis, GA Carlson- ACS Chemical, 2020 - ACS Publications | l-Threonine transaldolases (lTTAs) are a poorly characterized class of pyridoxal-5-phosphate (PLP) dependent enzymes responsible for the biosynthesis of diverse -hydroxy amino acids... The structure was solved by molecular replacement with a distantly related serine hydroxymethyltransferase (PDB ID: 4OT8, 28.2% identity |
| 3 | 3gvi | - | http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002396 | An Ancient Fingerprint Indicates the Common Ancestry of Rossmann-Fold Enzymes Utilizing Different Ribose-Based Cofactors | 2016 | P Laurino, Tth-Petrczy, R Meana-Paeda, W Lin - PLoS Biol, 2016 - journals.plos.org | ... PDB (Protein Data Bank) IDs and corresponding cofactors: 1JG2, ADN; 3GVI, ADP; 2HMU, ATP;2XXB, AMP; 1BWC, FAD; 1V5E, FAD; 1EG2, MTA; 2A14, 2PBF ... A) Zoom-in view of the structureof L-3-hydroxyacyl-CoA dehydrogenase belonging to the Rossmann fold (PDB 1F17 ... |
| 4 | 3py6 | - | http://www.springerlink.com/index/W2W04L2272052KUW.pdf | Cation-PI Interactions in beta-Lactamases: The Role in Structural Stability | 2012 | P Lavanya, S Ramaiah, A Anbarasu - Cell biochemistry and biophysics, 2012 - Springer | ... 3PY6-A K37?Y263 -5.33 -1.41 -6.74 K231?W228 -8.02 -1.66 -9.68 2G2W-A R266?F66 -1.62 -1.06 -2.71 R259?W290 -7.01 -4.74 -11.75 K34?W60 -2.81 -0.75 -3.56 Cell Biochem Biophys 123 Page 3. Table 1 continued PDB ID Cation?p interacting residues ... |
| 5 | 3py6 | - | http://www.sciencedirect.com/science/article/pii/S0010482513003661 | Computational analysis of N-H...PI interactions and its impact on the structural stability of beta-lactamases | 2014 | P Lavanya, S Ramaiah, A Anbarasu - Computers in Biology and Medicine, 2014 - Elsevier | ... Three dimensional structures of ?-lactamases were retrieved from Protein Data Bank (PDB) [26]. ... The PDB codes of selected 67 ?-lactamases in the dataset are as follows: ... A, 3IF6-A, 3L6N-A, 3LVZ-A, 3LY3-A, 3M2K-A, 3OPL-A, 3OZH-A, 3P09-A, 3PAE-A, 3PG4-A, 3PY6-A, 3QI0-A ... |
| 6 | 3py6 | - | http://link.springer.com/article/10.1007/s10867-013-9324-x | Influence of CH... O interactions on the structural stability of beta-lactamases | 2013 | P Lavanya, S Ramaiah, A Anbarasu - Journal of Biological Physics, 2013 - Springer | ... We selected a non-redundant data set of 95 ?-lactamases from the Protein Data Bank (PDB) [23] for our ... Table 2 CHEEEO interacting residues in the active site of ?-lactamases PDB ID Active site residues ... 130 Ser 70 Ser 235 Arg 244 Met 69 Tyr 105 Val 216 Gly 236 3PY6-A Arg ... |
| 7 | 3uk1 | 3upt | http://scripts.iucr.org/cgi-bin/paper?tt5073 | High-resolution structures of Lactobacillus salivarius transketolase in the presence and absence of thiamine pyrophosphate | 2015 | P Lukacik, CMC Lobley, M Bumann - Section F: Structural , 2015 - scripts.iucr.org | ... In this work, we present high-resolution crystal structures of the L. salivarius UCC118 Tkt protein(LsTktA) in the presence and absence ... Burkholderia thailandensis (PDB entry 3uk1 ), B. pseudomallei (PDB entry 3upt ), ... |
| 8 | 3ixc | - | http://www.earticle.net/Article.aspx?sn=291808 | Molecular Docking Studies of Wolbachia Endosymbiont of Brugia Malayi's Carbonic Anhydrase Using Coumarin-chromene Derivatives Towards Designing Anti-filarial | 2016 | P Malathy, G Jagadeesan, K Gunasekaran - , 2016 - earticle.net | ... The BLAST results shows a hexapeptide transferase family protein from Anaplasmaphagocytophilum (PDB ID: 3IXC) having 77% similarity and 54% identity with wBm carbonicanhydrase. Hence the above enzyme is chosen as the template and the 3D structure of carbonic ... |
| 9 | 6n1f | - | https://journals.asm.org/doi/abs/10.1128/mbio.00408-23 | Exaptation of Inactivated Host Enzymes for Structural Roles in Orthopoxviruses and Novel Folds of Virus Proteins Revealed by Protein Structure Modeling | 2023 | P Mutz, W Resch, G Faure, TG Senkevich, EV Koonin- Mbio, 2023 - Am Soc Microbiol | Given that all of the models in this work were compared both to the PDB and to the large database of AlphaFold2 ... OPG20 (C10L), OPG31 (C4L), and OPG165 (A37R) are homologs of hydroxylases.... the 2OG-Fe(II) Oxygenase family of Burkholderia pseudomallei (6n1f |
| 10 | 3f0g | 3ieq | http://discovery.dundee.ac.uk/portal/files/3384819/O'Rourke_phd_2013.pdf | Structural studies to inform antimicrobial drug discovery and the basis of immunity against T6 effectors | 2013 | P O'Rourke - 2013 - discovery.dundee.ac.uk | ... Search models for molecular replacement used coordinates from orthologues in E. coli (PDB code: 1GX1; ~33% identity, Kemp et al., 2002) and B.pseudomallei (PDB code: 3F0G;63%,Begley et al., 2011) for PfIspF and BcIspF respectively, edited to remove all non-protein atoms. ... |