We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7K4L | 2022 | 3 |
| 7K4N | 2020 | 38 |
| 7K5Z | 2020 | 0 |
| 7K62 | 2021 | 2 |
| 7K68 | 2021 | 0 |
| 7K69 | 2021 | 0 |
| 7K6A | 2021 | 1 |
| 7K6C | 2021 | 4 |
| 7K72 | 2020 | 0 |
| 7K73 | 2020 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4o5h | 4o6r, 4lih, 4u3w, 3ek1, 3i44 | http://www.ppgeq.propesp.ufpa.br/ARQUIVOS/dissertacoes/2017/PPGEQ-2017/Fabio%20B... | ESTUDO COMPUTACIONAL DA ENZIMA ALDEHYDE DEHYDROGENASE DE BIXA ORELLANA (URUCUM) E DOS LIGANTES ALDEÍDO DE BIXINA E NORBIXINA SOB A INFLUÊNCIA DO COFATOR NAD. | 2017 | Fábio Bruno Silva de Souza - ppgeq.propesp.ufpa.br | Therefore, the 3D structure of the PDB Banco de Dados de Protenas (Protein Data Bank) RMN Ressonncia Magntica Nuclear FASTA Arquivo RCSB Site de investigao de Tecnologias para Bioinformtica Estrutural (Research Collaboratory for Structural Bioinformatics) G |
| 2 | 4o5m | 3u0i | https://zaguan.unizar.es/record/135847 | Flavoenzymes in Microbial Systems: Analysis of Structure-Function Relationships | 2024 | MI Minjarez Saenz, MM Medina Trullenque - zaguan.unizar.es | Esta Tesis Doctoral se plante con objeto de mejorar nuestra comprensin de los mecanismos de accin especficos de especie en sistemas dependientes de flavoenzimas como |
| 3 | 4o5o | - | https://pubs.acs.org/doi/abs/10.1021/acs.biochem.7b01186 | Engineering Erg10 Thiolase from Saccharomyces cerevisiae as a Synthetic Toolkit for the Production of Branched-Chain Alcohols | 2018 | P Torres-Salas, V Bernal, F Lopez-Gallego- Biochemistry, 2018 - ACS Publications | Using a combined computational/experimental approach, and guided by structural information, we have studied the potential of thiolases to with novel properties, the naturally occurring metabolism of microorganisms is not always sufficient to obtain any desired structure |
| 4 | 4o5o | - | https://academic.oup.com/peds/article-abstract/doi/10.1093/protein/gzab008/62691... | A fragment-based protein interface design algorithm for symmetric assemblies | 2021 | J Laniado, K Meador, TO Yeates- Protein Engineering, Design, 2021 - academic.oup.com | The expansive database of known protein structures provides valuable empirical frameworks for The growing focus on secondary structure associations motivates an attempt to bring by precomputing common proteinprotein fragment configurations from known structural data |
| 5 | 4o6r | - | http://scripts.iucr.org/cgi-bin/paper?s1399004715004228 | Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus | 2015 | AS Halavaty, RL Rich, C Chen, JC Joo… - … Section D: Biological …, 2015 - scripts.iucr.org | ... DALI (Holm & Rosenstro¨ m, 2010) analysis found a putative ALDH from Burkholderia cenocepacia (PDB entry 4o6r; Seattle Structural Genomics Center for Infectious Disease, unpublished work) to be the closest structural homolog of SaBADH (Z-score of 59.6; r.m.s.d. of 1.3 A ° ; 38% sequence homology)... |
| 6 | 4o6r | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5324060/ | Evolutionary, computational, and biochemical studies of the salicylaldehyde dehydrogenases in the naphthalene degradation pathway | 2017 | B Jia, X Jia, KH Kim, ZJ Pu, MS Kang, CO Jeon - Scientific Reports, 2017 - ncbi.nlm.nih.gov | ... using the Modeller 9 program 28 based on the crystal structures of SALDpp (PDB ID: 4JZ6) andother aldehyde dehydrogenases (PDB ID: 4FR8, 4O6R, 4NMK, 2O2P, and ... The three-dimensionalstructure of SALDan was modeled using the Modeller 9 software program 28 . ... |
| 7 | 4o6r | 4kna, 3i44, 3ek1 | http://www.sciencedirect.com/science/article/pii/S0009279715000253 | Amino acid residues that affect the basicity of the catalytic glutamate of the hydrolytic aldehyde dehydrogenases | 2015 | RA Muñoz-Clares, L González-Segura… - Chemico-Biological Interactions, 2015 - Elsevier | ... groups as sticks with carbon atoms colored depending on the structure, oxygen in ... Family organism,enzyme (PDB code), pH crystal c, pK a, Hydrogen bond d ... Burkholderia cenocepacia, BCAM0469,AMP-complex (4O6R), 6.5, 7.42, Cys302↓ Gly270↓/Lys178↓ Glu399↑ Glu476 ... |
| 8 | 4odj | - | http://jb.oxfordjournals.org/content/160/6/355.short | Characterization and redox regulation of Plasmodium falciparum methionine adenosyltransferase | 2016 | J Pretzel, M Gehr, M Eisenkolb, L Wang - Journal of , 2016 - Jpn Biochemical Soc | ... The structure of PfalMAT was modelled according to the crystal structures of MAT2A fromHomo sapiens (PDB no. 2p02) and Cryptosporidium hominis (PDB no. 4odj) using theSWISS-MODEL automated comparative protein-modelling server (36). ... |
| 9 | 4odj | - | https://pubs.rsc.org/en/content/articlehtml/2019/cc/c9cc07807j | Nucleoside-modified AdoMet analogues for differential methyltransferase targeting | 2020 | NV Cornelissen, F Michailidou, F Muttach- Chemical, 2020 - pubs.rsc.org | 39 In addition, we tested the putative wildtype MAT from Cryptosporidium hominis (ChMAT) that had been crystallized by the Seattle Structural Genomics Center for Infectious Disease (SSGCID) but was otherwise ChMAT ( PDB : 4ODJ ) and hMAT2a ( PDB : 5A1G) have 59 |
| 10 | 4odj | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.202012623 | Engineered SAM synthetases for enzymatic generation of AdoMet analogs with photocaging groups and reversible DNA modification in cascade reactions | 2020 | F Michailidou, N Klcker- Angewandte Chemie, 2020 - Wiley Online Library | Figure 3. A) Superimposed structures of WT-ChMAT ( 4ODJ , shown in yellow) with product bound PC-ChMAT (6LTV, shown in grey) and share a sequence identity of 51% and are highly conserved in the active site (Figure S17), and our structure of PC-ChMAT ( PDB ID: 6LTV |