We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SKF | 2023 | 0 |
| 8SLD | 2023 | 0 |
| 8SLF | 2023 | 0 |
| 5VN6 | 2017 | 0 |
| 5VO7 | 2017 | 0 |
| 5VPS | 2017 | 0 |
| 8SLH | 2023 | 0 |
| 8SNG | 2023 | 0 |
| 8SNJ | 2023 | 0 |
| 8SOY | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ujh | - | https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.17368 | Engineering of the cytosolic form of phosphoglucose isomerase into chloroplasts improves plant photosynthesis and biomass | 2021 | F Gao, H Zhang, W Zhang, N Wang, S Zhang- New, 2021 - Wiley Online Library | in Shanghai, China. Diffraction data were processed by HKL2000 and the PGIs structure models ( PDB : 3UJH ). After cycles of auto model building (PHENIX) (Liebschner et al., 2019) and To investigate the structural basis for the dramatic activity difference between TaPGIc and |
| 2 | 4o5o | - | https://pubs.acs.org/doi/abs/10.1021/acs.biochem.7b01186 | Engineering Erg10 Thiolase from Saccharomyces cerevisiae as a Synthetic Toolkit for the Production of Branched-Chain Alcohols | 2018 | P Torres-Salas, V Bernal, F Lopez-Gallego- Biochemistry, 2018 - ACS Publications | Using a combined computational/experimental approach, and guided by structural information, we have studied the potential of thiolases to with novel properties, the naturally occurring metabolism of microorganisms is not always sufficient to obtain any desired structure |
| 3 | 3f9i | - | https://www.nature.com/articles/s41598-017-13978-w | Engineering a short-chain dehydrogenase/reductase for the stereoselective production of (2 S, 3 R, 4 S)-4-hydroxyisoleucine with three asymmetric centers | 2017 | X Shi, T Miyakawa, A Nakamura, F Hou, M Hibi- Scientific reports, 2017 - nature.com | The structure of HILDH-NADH was determined using the molecular replacement method performed by the program MOLREP on the CCP4 suite using the structure of 3-ketoacyl-(acyl-carrier-protein) reductase (PDB code, 3F9I; sequence identity, 34%) as the initial model. |
| 4 | 4odj | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/anie.202012623 | Engineered SAM synthetases for enzymatic generation of AdoMet analogs with photocaging groups and reversible DNA modification in cascade reactions | 2020 | F Michailidou, N Klcker- Angewandte Chemie, 2020 - Wiley Online Library | Figure 3. A) Superimposed structures of WT-ChMAT ( 4ODJ , shown in yellow) with product bound PC-ChMAT (6LTV, shown in grey) and share a sequence identity of 51% and are highly conserved in the active site (Figure S17), and our structure of PC-ChMAT ( PDB ID: 6LTV |
| 5 | 4hwg | - | https://www.biorxiv.org/content/10.1101/535138v1.abstract | Energy Landscape of the Domain Movement in Staphylococcus aureus UDP-N-acetylglucosamine 2-epimerase | 2019 | C de Azevedo, AS Nascimento- bioRxiv, 2019 - biorxiv.org | chain without ligands PDB ID Organism Ligands Oligomeric state CV Angle Chain A (deg) Rickettsia bellii ( 4HWG ). We hypothesize that the cubic symmetry observed in this crystal (UDP-GlcNac) and cofactor (UDP) are found bound in the crystal structure (1VGV, 3BEO, 4FKZ |
| 6 | 3jst | 4e98 | http://escholarship.org/uc/item/6kt7h3f4.pdf | Elucidation of genes of unknown function in alpha carboxysome operons: acRAF, BMVs and carbon regulatory PII proteins. | 2014 | NM Wheatley - 2014 - escholarship.org | ... B) Structural alignment of acRAF to PCD from Toxoplasma gondii (PDB 2V6T). T. gondii PCD is colored green. C) Structural alignments of active sites among five PCDs shown in green (PDB IDs: 1DC0, 2EBB, 2V6T, 3JST, 4C45). acRAF is shown in magenta. ... |
| 7 | 4ncx | 4olf, 4q15, 4wi1 | https://www.nature.com/articles/s41467-022-32630-4 | Elucidating the path to Plasmodium prolyl-tRNA synthetase inhibitors that overcome halofuginoneresistance | 2022 | MA Tye, NC Payne, C Johansson, K Singh- Nature, 2022 - nature.com | Encouraged by these results, we evaluated the reported co-crystal structure of compound 2 bound to HsProRS ( PDB : 5VAD) more closely and noted that the cyclohexyl substituent ... Ligands were docked against the ProRS structures reported here (PDB 6T7K, 7QB7, 7QC1, and 7QC2) and previously (for HsProRS, PDB: 5VAD, 4HVC, 4K86, 4K87, 4K88, and 5V58; for PfcProRS, PDB 4Q15, 4NCX, 4YDQ, 4OLF, 5IFU, and 4WI1). |
| 8 | 4ohc | - | https://pubs.acs.org/doi/abs/10.1021/acscatal.9b05294 | Elucidating the Catalytic Reaction Mechanism of Orotate Phosphoribosyltransferase by means of X-ray Crystallography and Computational Simulations | 2020 | M Roca, S Navas-Yuste, K Zinovjev- ACS, 2020 - ACS Publications | Then, the dimeric architecture of OPRTase plays an essential role in the catalysis since The coordinates and structure factors have been deposited in the Protein Data Bank ( PDB ) with accession codes 6TAI (EcOPRT), 6TAJ (EcOPRT/OA) and 6TAK (EcOPRT/OA/SO4 2-). 2.5 |
| 9 | 4dz4 | - | https://repositorio.unesp.br/handle/11449/193031 | Elucidao estrutural da especificidade por substratos de enzimas da biossntese de aminoglicosdeos e marginolactonas | 2020 | TP Cardoso - 2020 - repositorio.unesp.br | Marginolactone. Structure . Page 9. Lista de Ilustraes AERUGINOSA: GPUA- Q9I6K2; S. CLAVULIGERUS: PAH - P0DJQ3; B. THAILANDENSIS: BUR- Q2T3W4 [ 4DZ4 CDIGO DO PDB ]; D.RADIODURANS: DR_AGM- Q9RZ04; B. CALDOVELOX |
| 10 | 5u9p | 3ftp | https://pdfs.semanticscholar.org/eba1/31d1aecdd33eafa513c4bec6c3ec37d01b5b.pdf | Electrical Supporting information | 2018 | F Sha, Y Zheng, J Chen, K Chen, F Cao, M Yan - pdfs.semanticscholar.org | Entry Enzyme GenBank accession no. Amino acid identities with PspPDH [%] Template PDB code TM- scorea Gbind [kcal mol-1] 23 PhpPDH WP_045028254 41.53 4z9y 0.90 -5.71 1.96 24 DfPDH WP_050774712 31.98 5u9p 0.90 -11.90 2.01 |