We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5TP4 | 2017 | 0 |
| 8SBV | 2023 | 0 |
| 5TR9 | 2016 | 0 |
| 8SBX | 2023 | 0 |
| 5TT1 | 2016 | 0 |
| 5TVK | 2016 | 0 |
| 5U1P | 2016 | 0 |
| 8SBY | 2023 | 0 |
| 8SBZ | 2023 | 0 |
| 5U2A | 2016 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3h81 | 3njd, 3qk8, 3qka, 3q1t, 3pe8, 3p85, 3p5m, 3ome, 3oc7, 3myb, 3moy, 3he2 | http://iris.lib.neu.edu/chemistry_diss/57/ | Computational studies of enzyme function and dynamics | 2012 | P Yin - 2012 - iris.lib.neu.edu | ... Page 20. 19 List of Abbreviations Abbreviation Meaning CSA Catalytic Site Atlas PDB Protein Data Bank THEMATICS Theoretical Microscopic Titration Curves POOL Partial Order Optimal Likelihood ? Angstr?ms ?C Degrees Celsius ESR Electron Spin Resonance NMR ... |
| 2 | 4qji | - | https://www.sciencedirect.com/science/article/pii/S0022283618311392 | Crystallographic Analysis of the Catalytic Mechanism of Phosphopantothenoylcysteine Synthetase from Saccharomyces cerevisiae | 2019 | P Zheng, M Zhang, MH Khan, H Liu, Y Jin, J Yue- Journal of molecular, 2019 - Elsevier | 4a, b) [14], [15]. Overall structure of the enzymes represent tightly binding dimers linked by dimerization domains which are comprised of three regions as shown in Fig. S4 A divalent metal ion (Ca 2+ in E. coli; Mg 2+ in M. smegmatis. PDB ID: 1U7W; 4QJI ) is coordinated |
| 3 | 7m53 | - | https://www.cell.com/immunity/pdf/S1074-7613(23)00079-1.pdf | Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease | 2023 | P Zhou, G Song, H Liu, M Yuan, W He, N Beutler, X Zhu- Immunity, 2023 - cell.com | Glycan molecules (sticks, white) were modeled (based on structure in PDB : structures . Key epitope residues are buried in the stem-helix bundle (green) in prefusion spike... Figure S7. Structural comparison of antibodies targeting the coronavirus spike S2 stem helix. ... CV3-25 (7NAB), B6 (7M53), and IgG22 (7S3N). S |
| 4 | 5b8i | 6tz8 | https://dukespace.lib.duke.edu/bitstreams/8ce0d8e6-fc10-4ee6-abf1-af6eb975dd0f/d... | Development of Anti-Infectives Targeting Bacterial LpxH or Fungal FKBP12-Calcineurin | 2024 | PA Dome - 2024 - dukespace.lib.duke.edu | There are, however, structural differences between human and fungal calcineurin that may be exploited to design calcineurin inhibitors that maintain antifungal activity while abolishing |
| 5 | 3hhj | 4dyw | http://repositorio.udec.cl/handle/11594/1006 | Asociacin de genes nudA y htrA de Helicobacter pylori con severidad de patologas gstricas, estudio bioinformtico de la protena NudA. | 2019 | PA Lincoir Campos - 2019 - repositorio.udec.cl | Page 1. Universidad de Concepcin Direccin de Postgrado Facultad de Ciencias Biolgicas - Programa de Magister en Ciencias con Mencin en Microbiologa Asociacin de genes nudA y htrA de Helicobacter pylori con severidad de patologas gstricas |
| 6 | 3obk | - | https://www.sciencedirect.com/science/article/pii/S2468111320300372 | The Se S/N interactions as a possible mechanism of -aminolevulinic acid dehydratase enzyme inhibition by organoselenium compounds: a computational study | 2020 | PA Nogara, L Orian, JBT Rocha- Computational Toxicology, 2020 - Elsevier | Figure 1. (A) The structural formula of some organoselenium compounds, (B) the 5-aminolevulinic acid (5 theory (DFT) approach, are frequently used in the study of structures , reactions, and modeling has been successfully employed to predict the 3D protein structure , which is... (HEM2_STAAR); Toxoplasma gondii: PDB (3OBK); Wolbachia: NCBI (WP_041571452.1). |
| 7 | 4g7f | 4lsm, 4fzi, 4iv5 | https://link.springer.com/content/pdf/10.1007/s10863-020-09834-8.pdf | Synthesis of new N,S-acetal analogs derived from juglone with cytotoxic activity against Trypanossoma cruzi | 2020 | PAF Pacheco, T de Menezes Ribeiro- Journal of Bioenergetics, 2020 - Springer | Naphthoquinones are considered important structures in medicinal chemistry due to their synthetic versatility and their v.1.0.1 program was used to build the molec- ular structure of ligands the best SI value among all molecules tested indicating that this structural feature might |
| 8 | 4k9d | - | https://link.springer.com/article/10.1007/s00436-019-06225-w | Identification and characterization of glyceraldehyde 3-phosphate dehydrogenase from Fasciola gigantica | 2019 | PB Chetri, R Shukla, T Tripathi- Parasitology research, 2019 - Springer | homologs, and the structure of the GAPDH of Brugia Malayi ( PDB ID: 4K9D ) was selected After validation, the modeled structure was used for binding site prediction. The binding site was predicted using the PDB structure co-crystallized with substrate and cofactor (Frayne et al |
| 9 | 4k6f | - | https://repository.up.ac.za/handle/2263/62274 | Cloning, expression and molecular modeling of the anthocyanidin reductase (FaANR) gene during strawberry fruit development | 2017 | PC Mandave, AA Kuvalekar, NL Mantri, MA Islam - 2017 - repository.up.ac.za | on 3D structure of ANR obtained from homology modeling technique to check binding interaction of template molecule ( PDB ID: 4K6F ) with bound Their complex structure limits the com- mercial chemical synthesis and we are therefore highly re- liant on plants, especially |
| 10 | 4k6f | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Cloning, expression and molecular modeling of the anthocyanidin reductase (FaANR) gene during strawberry fruit development. | 2017 | PC Mandave, AA Kuvalekar, NL Mantri, MA Islam- Fruits, 2017 - search.ebscohost.com | respectively. Molecular docking study was performed on 3D structure of ANR obtained from homology modeling technique to check binding interaction of template molecule ( PDB ID: 4K6F ) with bound ligand (NADP). Ligand |