We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SKF | 2023 | 0 |
| 8SLD | 2023 | 0 |
| 8SLF | 2023 | 0 |
| 5VN6 | 2017 | 0 |
| 5VO7 | 2017 | 0 |
| 5VPS | 2017 | 0 |
| 8SLH | 2023 | 0 |
| 8SNG | 2023 | 0 |
| 8SNJ | 2023 | 0 |
| 8SOY | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4o5o | - | https://pubs.acs.org/doi/abs/10.1021/acs.biochem.7b01186 | Engineering Erg10 Thiolase from Saccharomyces cerevisiae as a Synthetic Toolkit for the Production of Branched-Chain Alcohols | 2018 | P Torres-Salas, V Bernal, F Lopez-Gallego- Biochemistry, 2018 - ACS Publications | Using a combined computational/experimental approach, and guided by structural information, we have studied the potential of thiolases to with novel properties, the naturally occurring metabolism of microorganisms is not always sufficient to obtain any desired structure |
| 2 | 3hhe | 3uw1 | http://www.sciencedirect.com/science/article/pii/S109332631400179X | Structural modeling and docking studies of ribose 5-phosphate isomerase from Leishmania major and Homo sapiens: A comparative analysis for Leishmaniasis … | 2015 | PVSZ Capriles, LPR Baptista, IA Guedes… - Journal of Molecular …, 2015 - Elsevier | ... identity: 42%); (iii) 2F8M [29], the R5PI type A structure from Plasmodium falciparum (identity:35%) and (iv) 3HHE [30], the R5PI type A structure from Bartonella ... The alignment analyses showedthat no PDB sequence was able to align against the 20 C-terminal amino acids ... |
| 3 | 4tu1 | - | http://www.jbc.org/content/early/2017/09/27/jbc.M117.811034.abstract | Isomer Activation Controls Stereospecificity of Class I Fructose-1, 6-bisphosphate Aldolases | 2017 | PW Heron, J Sygusch- Journal of Biological Chemistry, 2017 - ASBMB | At the structural level, there is complete conservation of the subunit beta-barrel fold 1A) corresponds to an active site fully occupied by FBP that super- poses identically with the FBP bound structure of the rabbit homolog [ PDB ID: 1ZAI] (rms devia- tion = 0.41 based on |
| 4 | 5u2w | - | https://www.sciencedirect.com/science/article/pii/S0022283619303675 | Structure-Guided Generation of a Redox-Independent Blue Fluorescent Protein from mBFP | 2019 | PW Seo, ES Jo, SH You, DE Cheong, GJ Kim- Journal of molecular, 2019 - Elsevier | Structure -guided mutagenesis confirmed the residues' role in the fluorescent capacity of mBFP Moreover, we identified another SDR family protein ( PDB ID 5u2w ) from Burkholderia cenocepacia J2315 (BFPbc) with blue fluorescent capacity in the presence of NADPH, which |
| 5 | 6cau | - | http://www.bdjn.org/APP_PDF/BDJN006-03-04.pdf | Phase determination of the UDP-N-acetylmuramic acid: L-alanine ligase (MurC) crystal from Mycobacterium bovis | 2018 | PW Seo, JS Kim - 2018 - bdjn.org | Haemophilus influenzae ( PDB ID 1P31, 1GQQ), Acinetobacter baumannii ( PDB ID 6CAU ), Yersinia pestis ( PDB ID 4HV4 of the PHENIX suite (Adams et al., 2010) using Y. pestis MurC ( PDB ID 4HV4 Structure of Escherichia coli UDP-N-acetylmuramoyl: L-alanine ligase (MurC) |
| 6 | 3h81 | 3njd, 3qk8, 3qka, 3q1t, 3pe8, 3p85, 3p5m, 3ome, 3oc7, 3myb, 3moy, 3he2 | http://iris.lib.neu.edu/chemistry_diss/57/ | Computational studies of enzyme function and dynamics | 2012 | P Yin - 2012 - iris.lib.neu.edu | ... Page 20. 19 List of Abbreviations Abbreviation Meaning CSA Catalytic Site Atlas PDB Protein Data Bank THEMATICS Theoretical Microscopic Titration Curves POOL Partial Order Optimal Likelihood ? Angstr?ms ?C Degrees Celsius ESR Electron Spin Resonance NMR ... |
| 7 | 4qji | - | https://www.sciencedirect.com/science/article/pii/S0022283618311392 | Crystallographic Analysis of the Catalytic Mechanism of Phosphopantothenoylcysteine Synthetase from Saccharomyces cerevisiae | 2019 | P Zheng, M Zhang, MH Khan, H Liu, Y Jin, J Yue- Journal of molecular, 2019 - Elsevier | 4a, b) [14], [15]. Overall structure of the enzymes represent tightly binding dimers linked by dimerization domains which are comprised of three regions as shown in Fig. S4 A divalent metal ion (Ca 2+ in E. coli; Mg 2+ in M. smegmatis. PDB ID: 1U7W; 4QJI ) is coordinated |
| 8 | 7m53 | - | https://www.cell.com/immunity/pdf/S1074-7613(23)00079-1.pdf | Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease | 2023 | P Zhou, G Song, H Liu, M Yuan, W He, N Beutler, X Zhu- Immunity, 2023 - cell.com | Glycan molecules (sticks, white) were modeled (based on structure in PDB : structures . Key epitope residues are buried in the stem-helix bundle (green) in prefusion spike... Figure S7. Structural comparison of antibodies targeting the coronavirus spike S2 stem helix. ... CV3-25 (7NAB), B6 (7M53), and IgG22 (7S3N). S |
| 9 | 4fry | - | http://www.jbc.org/content/early/2018/09/21/jbc.RA118.003830.short | Chromophorylation of cyanobacteriochrome Slr1393 from Synechocystis sp. PCC 6803 is regulated by protein Slr2111 through allosteric interaction | 2018 | Q He, QY Tang, YF Sun, M Zhou, W Grtner- Journal of Biological, 2018 - ASBMB | Taking the crystal structure of Bammc 406_4587 (a putative signal-transduction protein with CBS domains from Burkholderia ambifaria MC40-6, pdb code: 4fry ) (26) as template, a three-dimensional model of Slr2111 was constructed (Fig. 2 BE) |
| 10 | 3kzx | - | https://static-content.springer.com/esm/art%3A10.1186%2Fs12859-015-0758-y/MediaO... | Multi-Scale Investigation of Protein-Protein Interactions | 2017 | Q Hou - 2017 - dare.ubvu.vu.nl | ... The protein structure on the back cover is PDB 3E8L. ... Sequence level Although an increasing number of protein structures have become available, there is still a lack of structural data for most protein sequences, which is called the 'sequence- structure gap' [Rost and Sander ... |