We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5U4N | 2016 | 0 |
| 5UAI | 2017 | 0 |
| 4FK8 | 2012 | 0 |
| 5UCR | 2017 | 0 |
| 5UFT | 2017 | 0 |
| 5UJF | 2017 | 0 |
| 5UJU | 2017 | 0 |
| 5UM0 | 2017 | 0 |
| 5UNL | 2017 | 0 |
| 5UXV | 2018 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6pqh | - | https://orca.cf.ac.uk/138637/1/2021HanadiAsiriPhD.pdf | Development of Novel Antibacterial Agents through the Design and Synthesis of Aminoacyl tRNA Synthetase (AaRS) Inhibitors | 2020 | H Asiri, C Simons, E Mantzourani - 2020 - orca.cf.ac.uk | 33 Figure 16: Chemical structures of LysRS and AspRS inhibitors. 34 Figure 17: Chemical structures of AsnRS and AlaRS inhibitors. 34 Figure 21: 3D structure of Thermus thermophilus AsnRS ( pdb : 5ZG8) with two-8 amino acid residues gaps (161-168 and 209-216) identified. Table 7. Elizabethkingia anopheles 6PQH |
| 2 | 6cw5 | - | https://ubipayroll.com/earthline/index.php/ejcs/article/view/282 | In silico Structural Modelling of Ribokinase from Salmonella Typhi | 2021 | H Abubakar, Y Ndatsu, AD Musa, C Ogbiko- Earthline Journal of, 2021 - ubipayroll.com | done to check the stereochemical features of the predicted 3-dimensional structure of the BLASTp showed low identity of 40% (Table 1) with other proteins deposited in PDB and conserved domain (Figure 1). Multiple sequence alignment between the query, 6CW5 , 2FV7, 1VM7 |
| 3 | 3glq | - | http://xb.cnjournals.com/hnndzr/ch/reader/create_pdf.aspx?file_no=2016010308&fla... | Biological activity on cordycepin and cordycepin triphosphate based on the reverse molecular docking | 2016 | Gong, Guocai , Ling et al. - (J. Hunan Agr. Un. (Nat Sci) ), 2016 - xb.cnjournals.com | 12.83 3IID 8.89 2XZL 12.35 1ZOS 8.85 3LBN 12.34 3GLQ 8.75 1F2U 1QQO PDB 1 ADP Fig.1 Comparison the structure conformation |
| 4 | 3ej0 | - | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6252744 | Predicting protein-ligand binding site with differential evolution and support vector machine | 2012 | GY Wong, FHF Leung, SH Ling - 2012 International Joint Conference on Neural Networks (IJCNN), 2012 - ieeexplore.ieee.org | ... Predicted quaternary structures were used rather than the tertiary structures provided in Protein Data Bank (PDB) [2]. The attributes used in SVM are selected based on the properties of protein in four different areas: ... 1AHB 1BXQ 1M5R 2ZJA 3EJ0 1C1H 1DAK 1MKA 2ZU3 3F47 ... |
| 5 | 3kc6 | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0148432 | Genomic Signatures for Avian H7N9 Viruses Adapting to Humans | 2016 | GW Chen, SM Kuo, SL Yang, YN Gong, MR Hsiao - PloS one, 2016 - journals.plos.org | ... because it is the latest and the only full-length PB2 being resolved thus far [44], comparing withthe other commonly used avian influenza H5N1 PB2 C-terminal domain (CTD) structure (PDBID 3KC6) of 204-aa long covering only positions 538 to 741 of a full-length PB2 protein. ... |
| 6 | 5VOG | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7674647/ | Structural analysis of (p) ppGpp reveals its versatile binding pattern for diverse types of target proteins | 2020 | GS Kushwaha, A Patra, NS Bhavesh- Frontiers in microbiology, 2020 - ncbi.nlm.nih.gov | Although, glycosidic bond and ribose sugar in the nucleotide structure exhibit conformational flexibility and classical molecular dynamics simulation on nucleotides is S.No, Macromolecule Name, Resolution (), PDB ID 14, Putative phosphoribosyltransferase, 1.50, 5VOG |
| 7 | 3p96 | - | http://dx.plos.org/10.1371/journal.pone.0115409.g001 | Characterization of M. tuberculosis SerB2, an Essential HAD-Family Phosphatase, Reveals Novel Properties | 2014 | GP Yadav, S Shree, R Maurya, N Rai, DK Singh… - PloS one, 2014 - dx.plos.org | ... BLAST [22] search against the NCBI database with MtSerB2 revealed highest similarity (83%)with M. avium SerB whose X-ray structure has recently been reported [17]. Homology modelsof MtSerB2 based on M. avium SerB (PDB code 3P96) were generated using ... |
| 8 | 3uam | - | https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-017-2429-8 | The discovery of novel LPMO families with a new Hidden Markov model | 2017 | GP Voshol, E Vijgenboom - BMC Research , 2017 - bmcresnotes.biomedcentral.com | ... Q3JY22. 3UAM. nd. nd. AA10 (formerly CBM33). ... The structure of one of the AA10 LPMOs fromStreptomyces coelicolor A3(2) (PDB ID: 4OY7) [39], with the copper atom shown as a sphereand highly conserved residues labeled and shown as sticks. Genome mining for LPMOs. ... |
| 9 | 7jzl | 7jzn | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.1c00766 | Allosteric Control of Structural Mimicry and Mutational Escape in the SARS-CoV-2 Spike Protein Complexes with the ACE2 Decoys and Miniprotein Inhibitors: A | 2021 | GM Verkhivker, S Agajanian, DY Oztas- Journal of Chemical, 2021 - ACS Publications | Allosteric Control of Structural Mimicry and Mutational Escape in the SARS-CoV-2 Spike Protein Complexes with the ACE2 Decoys and Miniprotein Inhibitors: A Network-Based Approach for Mutational Profiling of Binding and Signaling |
| 10 | 7k43 | 7k4n | https://pubs.acs.org/doi/abs/10.1021/acs.jpcb.1c00395 | Integrated Biophysical Modeling of the SARS-CoV-2 Spike Protein Binding and Allosteric Interactions with Antibodies | 2021 | GM Verkhivker, L Di Paola- The Journal of Physical Chemistry B, 2021 - ACS Publications | Structural and biochemical studies of the severe acute respiratory syndrome (SARS)-CoV-2 spike glycoproteins and complexes with highly potent antibodies have revealed multiple conformation-dependen... |