We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SU6 | 2023 | 0 |
| 6B8V | 2017 | 0 |
| 6B9U | 2017 | 0 |
| 6BKV | 2017 | 0 |
| 8SWD | 2023 | 0 |
| 8T1A | 2023 | 0 |
| 8T5J | 2023 | 0 |
| 8T5N | 2023 | 0 |
| 6BZB | 2018 | 0 |
| 8T5T | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5vm1 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/jobm.201800482 | Heterologous expression and biochemical characterization of a thermostable xylulose kinase from Bacillus coagulans IPE22 | 2019 | Y Zhang, C Zhao, Z Ni, M Shao, M Han- Journal of basic, 2019 - Wiley Online Library | was shown in Figure 1. In the 3D structure modeling analysis, Bc-XK showed the highest sequence identity of 35% with the homologue from Brucella ovis ATCC 25840 ( PDB accession number 5VM1 , DOI: 10.2210/pdb5VM1/ pdb ), the confi- dence and structure coverage values |
| 2 | 6cw5 | - | https://www.sciencedirect.com/science/article/pii/S0141813019319464 | Unraveling structural insights of ribokinase from Leishmania donovani | 2019 | S Gatreddi, V Pillalamarri, D Vasudevan- International journal of, 2019 - Elsevier | Z-score 42.3; rmsd 2.1 for 307 C atoms), C. neoformans ( PDB ID: 6CW5 , Z-score 36.5; rmsd 2.7 for 290 C atoms) and adenosine kinase of A. tumefaciens ( PDB ID: 2RBC of a five amino acid stretch was observed at the two positions in the primary structure of LdRK |
| 3 | 3tde | 3rv2, 3s82, 3iml | https://uknowledge.uky.edu/pharmacy_etds/106/ | Toward an Enzyme-coupled, Bioorthogonal Platform for Methyltransferases: Probing the Specificity of Methionine Adenosyltransferases | 2019 | TD Huber - 2019 - uknowledge.uky.edu | 4.4.5 Protein crystallization, data collection, and structure refinement ..... 105 reported similar promiscuity for the archael Sulfolobus solfataricus MAT (sMAT) and, notably, the corresponding first structural elucidation for a thermostable MAT (sMAT, PDB ID 4HPV) |
| 4 | 4iwh | - | https://pubs.acs.org/doi/abs/10.1021/acscentsci.8b00912 | Predicting Protein Complex Structure from Surface-Induced Dissociation Mass Spectrometry Data | 2019 | JT Seffernick, SR Harvey, VH Wysocki- ACS Central, 2019 - ACS Publications | from which data have been favorably compared to known crystal structures on many along with other bioanalytical MS and dissociation techniques, yields useful structural information, the sparse, not allowing for an unambiguous determination of the protein complex structure... Additionally, the Pnear also improved for 56/57 ideal cases (except 4IWH) when SID data were used, as shown in Figure S3A. |
| 5 | 3tv2 | 3rd8, 3qbp, 3gtd | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.14782 | Structural, biochemical and biophysical characterization of recombinant human fumarate hydratase | 2019 | MA Ajalla Aleixo, VL Rangel, JK Rustiguel- The FEBS, 2019 - Wiley Online Library | code: 3GTD; [37]), Burkholderia pseudomallei FH (BpFH, PDB code: 3TV2 ; results not (MsFH, PDB code: 3RD8; [38]). The superposition of C atoms between HsFH and the From the structure -based drug design perspective, it is imperative to identify |
| 6 | 3rr2 | - | https://link.springer.com/article/10.1007/s13205-019-1572-4 | Insights into multifaceted activities of CysK for therapeutic interventions | 2019 | P Joshi, A Gupta, V Gupta- 3 Biotech, 2019 - Springer | PDB ID (References) 3RR2 (Baugh et al A recent study where a natural A241V variant of S. flexneri CysE has unstable quaternary assembly and reduced activity, suggests transient dissociation of quaternary structure of CysE to be another regulatory mechanism for cysteine |
| 7 | 5unb | - | https://ora.ox.ac.uk/objects/uuid:bd3dc30e-2835-45d8-b1ba-dafa2f552e98/download_... | Janus kinase inhibition for autoinflammation in DNASE2 deficiency | 2019 | S Nanthapisal, A Cavounidis, H Takeshita- Journal of Allergy and, 2019 - ora.ox.ac.uk | Structural modeling Structural models and figures were prepared by using the ICM software package (MolSoft, San Diego, Calif). A homology model for human DNase II was prepared by using the existing structure from B thailandensis ( PDB 5UNB ) as the model template |
| 8 | 5jy1 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/adsc.201900144 | Clean Enzymatic Oxidation of 12Hydroxysteroids to 12OxoDerivatives Catalyzed by Hydroxysteroid Dehydrogenase | 2019 | F Tonin, N Alvarenga, JZ Ye- Advanced Synthesis, 2019 - Wiley Online Library | MODEL (https://swissmodel.expasy.org/ interactive), employing the crystal structure of the putative SDR from Burkholderia xenovorans ( PDB ID: 5JY1 .1) as determination of the cosubstrate specificity of these enzymes.[11] The 3D model of the El12-HSDH structure showed a |
| 9 | 5vcu | - | http://www.japsonline.com/admin/php/uploads/2894_pdf.pdf | In-silico study of flavonoids from Cassia tora as potential anti-psoriatic agent | 2019 | I Akachukwu, EE Amara- Journal of Applied Pharmaceutical, 2019 - japsonline.com | 4; CCS ( PDB 5QC5) cathepsin S; JAK-3 ( PDB 5TTS) Janus kinase; RAC-1 ( PDB 5VCU ) Ras-related a vital structural requirement for strong binding with the target proteins The validity of the suggested structure - activity relationship is predicated on the observed reduction of |
| 10 | 4ix8 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/2211-5463.12715 | Biochemical and structural characterization of tyrosine aminotransferase suggests broad substrate specificity and a two state folding mechanism in Leishmania | 2019 | S Sasidharan, P Saudagar- FEBS Open Bio, 2019 - Wiley Online Library | outlier region. PROSA score of PM0081305 was -8.56 and the score remained in the region of known native structures . The template structure that was taken for modeling ( PDB ID: 4IX8 ) had a PROSA score of -8.89. The structure |