We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SQO | 2023 | 0 |
| 8SQP | 2023 | 0 |
| 6ANZ | 2017 | 0 |
| 6AP5 | 2017 | 0 |
| 6AQ3 | 2017 | 0 |
| 8SQQ | 2023 | 0 |
| 6AQH | 2017 | 0 |
| 6AQY | 2017 | 0 |
| 8SQR | 2023 | 0 |
| 8SQT | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5deo | - | https://pubs.acs.org/doi/abs/10.1021/acschembio.9b00124 | Novel antimycobacterial compounds suppress NAD biogenesis by targeting a unique pocket of NaMN adenylyltransferase | 2019 | AL Osterman, I Rodionova, X Li, E Sergienko- ACS chemical, 2019 - ACS Publications | ADVERTISEMENT. Log In Register. Cart. ACS; ACS Publications; C&EN; CAS. ACS Publications: ACS Journals; ACS eBooks; C&EN Global Enterprise. A; Accounts of Chemical Research; ACS Applied Bio Materials; ACS Applied Electronic |
| 2 | 5el0 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25869 | An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45. | 2019 | PI Koukos, J Roel-Touris, F Ambrosetti, C Geng- bioRxiv, 2019 - biorxiv.org | For the server submission of target 134, we modelled the protein on PDB entry 4d07 and the peptide on 4d07 and 4qh8, threading the target sequence on the peptide structure of the templates 5el0 and followed similar strategies as for target 134. Template-based targets |
| 3 | 5eqz | - | https://www.nature.com/articles/s41598-019-53830-x | Membrane directed expression in Escherichia coli of BBA57 and other virulence factors from the Lyme disease agent Borrelia burgdorferi | 2019 | KE Robertson, CD Truong, FM Craciunescu, PL Chiu- Scientific reports, 2019 - nature.com | All available structures from the genus Borrelia represent proteins expressed without a membrane Towards elucidating structure and function of these critical proteins, we directed translocation of to the outer membrane, Another criterion was the lack of structures in the PDB. RevA has a structure in the PDB33, a 1.80 Å crystal structure (accession no. 5EQZ, unpublished [J.K. Yano, A.H. Sullivan, J. Abendroth, D.D. Lorimer, and T.E. Edwards]), which is of the soluble domain that was expressed in the c |
| 4 | 3pk0 | 5if3 | https://pubs.acs.org/doi/abs/10.1021/acscatal.9b00621 | Two enantiocomplementary Ephedrine Dehydrogenases from Arthrobacter sp. TS-15 with broad substrate specificity | 2019 | T Shanati, C Lockie, L Beloti, G Grogan- ACS, 2019 - ACS Publications | provide a detailed insight into both the functional and structural characteristics of PseDH and EDH.. A comparison with 30 structures of SDRs from bacterial species in the PDB suggests that S143 is most commonly a small hydrophobic residue, such as G, A, or V, whereas W152 is most commonly an H, M, or L, although in SDRs from Burkholderia vietnamiensis (5IF3) and Mycobacterium smegmatis (3PK0) the residue is W |
| 5 | 5jy1 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/adsc.201900144 | Clean Enzymatic Oxidation of 12Hydroxysteroids to 12OxoDerivatives Catalyzed by Hydroxysteroid Dehydrogenase | 2019 | F Tonin, N Alvarenga, JZ Ye- Advanced Synthesis, 2019 - Wiley Online Library | MODEL (https://swissmodel.expasy.org/ interactive), employing the crystal structure of the putative SDR from Burkholderia xenovorans ( PDB ID: 5JY1 .1) as determination of the cosubstrate specificity of these enzymes.[11] The 3D model of the El12-HSDH structure showed a |
| 6 | 5k85 | - | https://www.sciencedirect.com/science/article/pii/S0022283619303092 | Structures of 2-Hydroxyisobutyric Acid-CoA Ligase Reveal Determinants of Substrate Specificity and Describe a Multi-Conformational Catalytic Cycle | 2019 | M Zahn, N Kurteva-Yaneva, J Schuster, U Krug- Journal of molecular, 2019 - Elsevier | The substrate specificity of HCL corresponds well to the adenylate-forming active-site architecture ... This is in contrast to other ANL ligase structures, where the CoA or acyl-CoA molecules adopt more stretched conformations, for example, in the thioester-forming conformations of bacterial [38] and fungal acetyl-CoA synthetase (PDB ID: 5K85), |
| 7 | 3tde | 5t8s, 3iml | https://www.sciencedirect.com/science/article/pii/S0022283619305480 | The interdimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase | 2019 | D Kleiner, F Shmulevich, R Zarivach, A Shahar- Journal of molecular, 2019 - Elsevier | MAT ( PDB ID), Phylum/class, Monomer length b, % sequence identity to E. coli, Interface c, M. tuberculosis ( 3TDE ), Actinobacteria/actinobacteria, 403, 59%, large, 11.5, 1983, 23, 11 1). In addition, the flexible loops (positions 89116) fully discernible in this structure were found |
| 8 | 5ts2 | 3pxu | https://www.sciencedirect.com/science/article/pii/S0141813019351451 | Structural and biochemical studies of phosphopantetheine adenylyltransferase from Acinetobacter baumannii with dephospho-coenzyme A and coenzyme A | 2019 | A Gupta, PK Singh, P Sharma, P Kaur, S Sharma- International journal of, 2019 - Elsevier | pseudolamelli (BpPPAT, PDB ID: 3PXU), Mycobacterium abcessus (MaPPAT, PDB ID: 5O08) and Pseudomonas aeruginosa (PaPPAT, PDB ID: 5TS2 Therefore, structure of enzyme, PPAT must be determined from the bacterium against whom specific drug has to be designed |
| 9 | 5u25 | - | https://www.mdpi.com/2077-0383/8/12/2117 | FAD/NADH Dependent Oxidoreductases: From Different Amino Acid Sequences to Similar Protein Shapes for Playing an Ancient Function | 2019 | L Trisolini, N Gambacorta, R Gorgoglione- Journal of Clinical, 2019 - mdpi.com | Here, we present a structural comparative analysis showing that the investigated flavoprotein oxidoreductases have a highly similar overall structure , although the investigated Similarly, AIF-crystallized structure hosts a FAD and two NADH molecules (4bur. pdb , [26]) and |
| 10 | 5u29 | - | https://repositorio.ufpb.br/jspui/handle/123456789/15841 | Sntese, elucidao estrutural e estudos in silico de novos compostos 2-amino-tiofnicos imdicos candidatos a frmacos antifngicos, antileishmanicida e | 2019 | ALC Pereira - 2019 - repositorio.ufpb.br | Synthesis, structural elucidation and in silico studies of novel 2-amino- thiopheneic compounds imidic hybrids were synthesized with determined physicochemical characteristics and confirmed structures through 1H CYP51A1 ( PDB id: 1EA1); (B): ESBT-06 e FTAs ( PDB id: 3SFX |