We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3MX6 | 2010 | 11 |
| 5KHA | 2016 | 11 |
| 4LSM | 2013 | 11 |
| 4IUJ | 2013 | 11 |
| 3NRR | 2010 | 11 |
| 3RR2 | 2011 | 11 |
| 3EK2 | 2008 | 11 |
| 3GKA | 2009 | 11 |
| 3NDO | 2010 | 11 |
| 3KRB | 2009 | 11 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6tys | 7ki6, 7ki4 | https://www.nature.com/articles/s41467-023-39278-8 | Structure and antigenicity of divergent Henipavirus fusion glycoproteins | 2023 | A Isaacs, YS Low, KL Macauslane, J Seitanidou- Nature, 2023 - nature.com | -EM structures from this work also display clear fusion peptide loop densities, which were only previously seen in structures determined by X-ray crystallography for NiV F ( PDB 5EVM & |
| 2 | 3lrf | - | https://www.sciencedirect.com/science/article/pii/S1093326323001638 | Identification of novel compounds against Acinetobacter baumannii 3-oxoacyl-[acyl-carrier-protein] synthase I (FabB) via comprehensive structure-based computational approaches | 2023 | E Albayrak, S Koer, O Mutlu- Journal of Molecular Graphics and Modelling, 2023 - Elsevier | FabB from Vibrio cholerae ( PDB ID: 4XOX ) was selected as a template structure with 57.46% identity for the homology modeling. After modeling, GMQE (Global Model Quality Estimate) ... |
| 3 | 7m5e | - | https://digital.lib.washington.edu/researchworks/handle/1773/50705 | Development of Automated Methods for Modeling Ligands in Cryo-Electron Microscopy Data | 2023 | A Muenks - 2023 - digital.lib.washington.edu | compared our results to their respective deposited structures and high-resolution crystal crystal structure . For each ligand-protein pair in the EMDB dataset, the PDB was searched for |
| 4 | 4f2n | - | https://www.nature.com/articles/s41598-023-45448-x | Dual-target drugs against Leishmania donovani for potential novel therapeutics | 2023 | K Bora, M Sarma, SP Kanaujia, VK Dubey- Scientific Reports, 2023 - nature.com | For this study, the crystal structures of Leishmania major FeSODA ( PDB ID: 4F2N ) and ( PDB ID: 2JK6) were obtained from the PDB database 13,14 . The crystal structure of 4F2N was |
| 5 | 3hzg | - | https://www.nature.com/articles/s42003-023-05227-w | Biosynthesis of ansamitocin P-3 incurs stress on the producing strain Actinosynnema pretiosum at multiple targets | 2023 | Q Huang, X Zhang, Z Guo, X Fu, Y Zhao- Communications, 2023 - nature.com | FDTS and dTGD were aligned to 3hzg and 1r66, which form a homo-tetramer and homo- The molecular structure of AP-3 was obtained from the PDB database ( PDB ID: 7e4p). |
| 6 | 5koi | - | https://www.mdpi.com/2077-0375/13/6/568 | The Alternating Access Mechanism in Mammalian Multidrug Resistance Transporters and Their Bacterial Homologs | 2023 | SA Badiee, UH Isu, E Khodadadi, M Moradi- Membranes, 2023 - mdpi.com | By exploring the structural and functional features of PDB files for each protein by resolution, starting with higher-resolution structures and progressing to lower-resolution structures Table 1. Available PDB files for MRP1, Pgp, Sav1866, and MsbA transporter proteins. ... 5KOI [59] 3.85 Å X-ray |
| 7 | 3k9g | 3s6l, 3oib, 3km3, 3njb, 3o2e | https://scripts.iucr.org/cgi-bin/paper?nz5010 | Multivariate estimation of substructure amplitudes for a single-wavelength anomalous diffraction experiment | 2023 | NS Pannu, P Skubk- Acta Crystallographica Section D: Structural, 2023 - scripts.iucr.org | The model-building performance is judged by the fraction of the PDB -deposited model backbone that is `correctly built'. A residue is considered to be correctly built if its C position is at |
| 8 | 3o0m | 3oj7, 3r6f, 3lb5 | https://udspace.udel.edu/items/40e2c554-f9dc-43a9-bb93-b6dd5914e73c | Potential Binding Partners of cADPR and cADPR isomers in the Thoeris Phage Defense System | 2023 | N Bomasamudram - 2023 - udspace.udel.edu | structures , and they differ based on their Cterminus. The structures of categorized Hint structures hydrocarbonoclasticus (3OHE), and Mycolicibacterium smegmatis ( 3O0M ). Type III Hint |
| 9 | 6ml8 | - | https://www.nature.com/articles/s42003-023-04793-3 | Structural insights into the broad protection against H1 influenza viruses by a computationally optimized hemagglutinin vaccine | 2023 | JV Dzimianski, J Han, GA Sautto, SM O'Rourke- Communications, 2023 - nature.com | a Closeup of Asn127 of COBRA P1 overlayed with structures of CA/04/09 ( PDB 3LZG) and DV/1/57 bound to the RBS-targeting antibody C05 ( PDB 6ML8 ). b Biolayer interferometry of |
| 10 | 6n38 | - | https://www.sciencedirect.com/science/article/pii/S0022283622005447 | Coevolution-Guided Mapping of the Type VI Secretion Membrane Complex-Baseplate Interface | 2023 | E Vanliolu, YG Santin, I Filella-Merce- Journal of Molecular, 2023 - Elsevier | the EAEC T6SS wedge complex structure 10 as a benchmark in a The known structure of the wedge complex ( PDB : 6N38 ) was AlphaFold2 structural models were generated using the |