We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5V0R | 2017 | 0 |
| 5V0U | 2017 | 0 |
| 5V77 | 2017 | 0 |
| 5VA8 | 2017 | 0 |
| 5VC2 | 2017 | 0 |
| 5VIX | 2017 | 0 |
| 8SKF | 2023 | 0 |
| 8SLD | 2023 | 0 |
| 8SLF | 2023 | 0 |
| 5VN6 | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3jst | 4e98 | http://escholarship.org/uc/item/6kt7h3f4.pdf | Elucidation of genes of unknown function in alpha carboxysome operons: acRAF, BMVs and carbon regulatory PII proteins. | 2014 | NM Wheatley - 2014 - escholarship.org | ... B) Structural alignment of acRAF to PCD from Toxoplasma gondii (PDB 2V6T). T. gondii PCD is colored green. C) Structural alignments of active sites among five PCDs shown in green (PDB IDs: 1DC0, 2EBB, 2V6T, 3JST, 4C45). acRAF is shown in magenta. ... |
| 2 | 4ncx | 4olf, 4q15, 4wi1 | https://www.nature.com/articles/s41467-022-32630-4 | Elucidating the path to Plasmodium prolyl-tRNA synthetase inhibitors that overcome halofuginoneresistance | 2022 | MA Tye, NC Payne, C Johansson, K Singh- Nature, 2022 - nature.com | Encouraged by these results, we evaluated the reported co-crystal structure of compound 2 bound to HsProRS ( PDB : 5VAD) more closely and noted that the cyclohexyl substituent ... Ligands were docked against the ProRS structures reported here (PDB 6T7K, 7QB7, 7QC1, and 7QC2) and previously (for HsProRS, PDB: 5VAD, 4HVC, 4K86, 4K87, 4K88, and 5V58; for PfcProRS, PDB 4Q15, 4NCX, 4YDQ, 4OLF, 5IFU, and 4WI1). |
| 3 | 4ohc | - | https://pubs.acs.org/doi/abs/10.1021/acscatal.9b05294 | Elucidating the Catalytic Reaction Mechanism of Orotate Phosphoribosyltransferase by means of X-ray Crystallography and Computational Simulations | 2020 | M Roca, S Navas-Yuste, K Zinovjev- ACS, 2020 - ACS Publications | Then, the dimeric architecture of OPRTase plays an essential role in the catalysis since The coordinates and structure factors have been deposited in the Protein Data Bank ( PDB ) with accession codes 6TAI (EcOPRT), 6TAJ (EcOPRT/OA) and 6TAK (EcOPRT/OA/SO4 2-). 2.5 |
| 4 | 4dz4 | - | https://repositorio.unesp.br/handle/11449/193031 | Elucidao estrutural da especificidade por substratos de enzimas da biossntese de aminoglicosdeos e marginolactonas | 2020 | TP Cardoso - 2020 - repositorio.unesp.br | Marginolactone. Structure . Page 9. Lista de Ilustraes AERUGINOSA: GPUA- Q9I6K2; S. CLAVULIGERUS: PAH - P0DJQ3; B. THAILANDENSIS: BUR- Q2T3W4 [ 4DZ4 CDIGO DO PDB ]; D.RADIODURANS: DR_AGM- Q9RZ04; B. CALDOVELOX |
| 5 | 5u9p | 3ftp | https://pdfs.semanticscholar.org/eba1/31d1aecdd33eafa513c4bec6c3ec37d01b5b.pdf | Electrical Supporting information | 2018 | F Sha, Y Zheng, J Chen, K Chen, F Cao, M Yan - pdfs.semanticscholar.org | Entry Enzyme GenBank accession no. Amino acid identities with PspPDH [%] Template PDB code TM- scorea Gbind [kcal mol-1] 23 PhpPDH WP_045028254 41.53 4z9y 0.90 -5.71 1.96 24 DfPDH WP_050774712 31.98 5u9p 0.90 -11.90 2.01 |
| 6 | 3s6d | 4nvt, 4g1k, 3kxq | https://ru.dgb.unam.mx/bitstreams/ca3f11da-2906-4725-9e14-821490ba5bf5/download | El paisaje conformacional de las protenas: estudio de barriles TIM naturales y diseados de novo | 2017 | S Romero Romero - 2017 - ru.dgb.unam.mx | of one of them, ReTIM18, was determined; its structure shows that the interactions were correctly designed, since the RMSD between the Rosetta model and the structure is only 0.87 . |
| 7 | 2khp | - | http://ideaexchange.uakron.edu/honors_research_projects/403/ | Effects of novel fragment-warhead adducts in situ and in vitro with glutaredoxin orthologs. | 2017 | AJ Caras - 2017 - ideaexchange.uakron.edu | ... Figure 1. Structure of RK088 ACP, an example of a fragment- warhead adduct. ... by pastmembers of Dr. Leeper's group.23 Figure 2. Solution structures of hGRX1 (PDB: 1JHB)29and BrmGRX (PDB: 2KHP)20, with the CPYC active-site motif magnified. ... |
| 8 | 2kz0 | - | http://search.proquest.com/openview/3f94657ea37d3e9d72f2c6f284f4d53a/1?pq-origsi... | Effects of Mutating the PPAR Subfamily Specific Residueson Basal Dimerization with RXR | 2012 | KV Moore - 2012 - search.proquest.com | entropy is the entropy distance for the subfamily, and the protein sequence position is the position of the amino acids found on model 2KZ0 of Protein Data Bank ( PDB ). Figure 1.1 Figure 2.2. Schematic Representation of the Domain Structure of PPARs. Page 25. 12 |
| 9 | 5ucm | - | https://link.springer.com/article/10.1007/s10930-020-09910-3 | Effects of Distal Mutations on Prolyl-Adenylate Formation of Escherichia coli Prolyl-tRNA Synthetase | 2020 | J Zajac, H Anderson, L Adams, D Wangmo, S Suhail- The Protein, 2020 - Springer | Identifying and understanding how these catalytic residues help enzymes achieve enormous rate enhancement has been the focus of many structural and biochemical studies over the past several decades Fig. 1 figure1. Structural model of E. coli ProRS |
| 10 | 3uam | - | https://academic.oup.com/plcell/advance-article-abstract/doi/10.1093/plcell/koab... | Effectors With Chitinase Activity (EWCAs), a family of conserved, secreted fungal chitinases that suppress chitin-triggered immunity | 2021 | J Martnez-Cruz, D Romero, J Hierrezuelo- The Plant, 2021 - academic.oup.com | Phytopathogenic fungi secrete effectors with chitinase activity to break down immunogenic chitin oligomers and suppress plant immunity. The other models are 3D models of crystallized proteins from Hypocrea jecorina (2VTC, glycoside hydrolase family 61 member), A. oryzae (4MAH, lytic poly- saccharide monooxygenase), E. faecalis (4A02, chitinase), and Burkholderia pseudomallei (3UAM, chitin-binding domain) |