We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SU6 | 2023 | 0 |
| 6B8V | 2017 | 0 |
| 6B9U | 2017 | 0 |
| 6BKV | 2017 | 0 |
| 8SWD | 2023 | 0 |
| 8T1A | 2023 | 0 |
| 8T5J | 2023 | 0 |
| 8T5N | 2023 | 0 |
| 6BZB | 2018 | 0 |
| 8T5T | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4di1 | 3moy | http://search.proquest.com/openview/9e1cbcf92f9d0d582217fdb88b682434/1?pq-origsi... | Structural and bioinformatic analysis of ethylmalonyl-CoA decarboxylase | 2015 | RL Roberts - 2015 - search.proquest.com | ... is the murine methylmalonyl-CoA decarboxylase trimer (PDB code: 1ef8), bottom right is thehuman AUH protein hexamer (PDB code: 1hzd). ... Having a 3D structure of EMCD could allowresearchers to probe the active site and intelligently design structural perturbations to ... |
| 2 | 3fdz | 3ezn | http://search.proquest.com/openview/4de212650c142a0818d74dc9ee7da4f8/1?pq-origsi... | Computational methods & forcefields for protein design, structure prediction, & refinement with natural & modified amino acids | 2015 | GA Khoury - 2015 - search.proquest.com | ... These were assessed by aligning the modied and unmodied structures containedinthe PDB with each other. (B) Structural similarity between the unmodied structure(U-PDB) and states of unmodied structure simulation (S1). ... |
| 3 | 4k9d | - | http://www.sciencedirect.com/science/article/pii/S0001706X15000194 | Surface-displayed glyceraldehyde 3-phosphate dehydrogenase and galectin from Dirofilaria immitis enhance the activation of the fibrinolytic system of the host | 2015 | J González-Miguel, R Morchón, M Siles-Lucas… - Acta tropica, 2015 - Elsevier | ... msa/clustalw2/) and prediction of the secondary structures and three-dimensional modeling with the Swiss-Model server ( Arnold et al., 2006; http://swissmodel.expasy.org/) using as templates the X-ray crystal structure of a GAPDH from B. malayi (code pdb: 4K9D) for DiGAPDH ... |
| 4 | 3s4k | - | https://oaktrust.library.tamu.edu/handle/1969.1/156485 | Biosynthesis and Cellular Actions of Bioactive Natural Products | 2015 | S Mori - 2015 - oaktrust.library.tamu.edu | The structure of AziG was determined using the molecular replacement method, with Mycobacterium tuberculosis thioesterase (PDB ID: 3S4K) as the model. |
| 5 | 4dut | - | http://dndx.cnjournals.com/html/2015/3/20140319.htm | Structural and Functional Characterization of Acinetobacter baumannii Nucleoside Diphosphate Kinase | 2015 | Progress in Biochemistry and Biophysics, 2015, 42(3): 260-267 | ... 82.12. 2.4 Structure determination and refinement. Initially,wild type structurewas determined by molecular replacement (MR) method using Burkholderiathailandensis NDK (PDB code 4DUT) as starting model. After ... |
| 6 | 3p4i | 4dq8 | http://uir.unisa.ac.za/handle/10500/19148 | Mycobacterium tuberculosis kinases as potential drug targets: production of recombinant kinases in E. coli for functional characterization and enzyme inhibition | 2015 | V Lukman - 2015 - uir.unisa.ac.za | ... Other mycobacterial AKs have been deposited in the Protein Data Bank (www.pdb.org), with high levels of similarity to the putative Mtb AK (M. avum, pdb 3P4I at 74.4% and M. marinum pdb 4DQ8 at 75.1%). ... |
| 7 | 3tcq | - | http://link.springer.com/article/10.1186/s13029-015-0039-1 | CombAlign: a code for generating a one-to-many sequence alignment from a set of pairwise structure-based sequence alignments | 2015 | CLE Zhou - Source Code for Biology and Medicine, 2015 - Springer | ... there exist crystal structures for several of the filovirus VP40 proteins [ 21 ] (Sudan: 3TCQ, 4LD8;Zaire: 4LDB, 4LDD, 4LDM; Ebola sp.: 1ES6, 1H2C, 1H2D), structure models for ... models for proteinsthat are represented in the Protein Data Bank database (PDB) will naturally ... |
| 8 | 3sdw | 3sgw, 3qd5, 4em8, 3s5p | http://search.proquest.com/openview/d609872dcf4202be5c1c8582c3e46eb9/1?pq-origsi... | Evaluation of Trypanosoma brucei asparagine synthetase A and ribose 5-phosphate isomerase B as potential drug targets | 2015 | IMS Loureiro - 2015 - search.proquest.com | ... Figure 9. Licensed current therapies against HAT. (A) Structures of drugs used to treat. early and late stage disease. ... PARP procyclic acidic repetitive protein. PDB Protein Data Bank. ... molecules with a conserved core structure of glycosylphosphatidylinositol (GPI) anchored. ...Coccidioides immintis (PDB 3QD5, 3SDW and 3SGW) (Min et al, 2002), Anaplasma phagocytophilum (PDB 4EM8), Clostridium thermocellium (PDB 3PH3, 3PH4 3HEE, and 3HE8) (Jung et al, 2011), Giardia lamblia (PDB 3S5P) |
| 9 | 3k2h | - | http://www.theses.fr/2015STRAF059 | Characterization of natural product biological imprints for computer-aided drug design applications | 2015 | N Sturm - 2015 - theses.fr | ... Changes in sequence and structure also explain the poor similarity between SB4 inhibitor-binding sites in Mitogen-activated protein (MAP) kinase 14 and MAP kinase 1 (PDB codes: 1bl7, 3erk), and between the antifolate LYA-binding site in human and protozoan thymidylate synthases (PDB codes: 1juj, 3k2h). ... |
| 10 | 3p0x | - | http://ira.lib.polyu.edu.hk/handle/10397/35473 | Identification of protein-ligand binding site using machine learning and hybrid pre-processing techniques | 2015 | YKG Wong - 2015 - ira.lib.polyu.edu.hk | ... This type is suit- able if no structural information about the target is available. Another one isstructure- ... All this information can be found from the Protein Data Bank (PDB) [6] or Protein Qua-ternary Structure file server (PQS) [7], which show the atomic coordinates and the qua- ... |