We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5V0R | 2017 | 0 |
| 5V0U | 2017 | 0 |
| 5V77 | 2017 | 0 |
| 5VA8 | 2017 | 0 |
| 5VC2 | 2017 | 0 |
| 5VIX | 2017 | 0 |
| 8SKF | 2023 | 0 |
| 8SLD | 2023 | 0 |
| 8SLF | 2023 | 0 |
| 5VN6 | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3he2 | - | http://www.nature.com/articles/nmicrobiol20156 | THPP target assignment reveals EchA6 as an essential fatty acid shuttle in mycobacteria | 2016 | JAG Cox, KA Abrahams, C Alemparte - Nature , 2016 - nature.com | ... Using M. tuberculosis EchA6 (PDB entry 3HE2) as a search model, we determined initial phases by molecular replacement (PHASER39). The models were rebuilt and refined (COOT40, REFMAC541, PHENIX.REFINE42) using non-crystallographic symmetry ... |
| 2 | 3qdf | 4qku, 3rr6, 4maq, 4pfz, 3r6o | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b00050 | Crystal structures of apo and liganded 4-oxalocrotonate decarboxylase uncover a structural basis for the metal-assisted decarboxylation of a vinylogous -keto acid | 2016 | SL Guimares, JB Coitinho, DMA Costa, SS Arajo - Biochemistry, 2016 - ACS Publications | ... Analysis of the crystal structures implicates a lid domain in substrate binding and suggests roles for ... Representative tertiary and quaternary structures of enzymes from (A) Mus musculus (PDB entry 1QCN(30)) and Burkholderia cenocepacia (PDB entry 4QKU); (B) Sulfolobus solfataricus (PDB entry 2Q18(32)); (C) Mycobacterium marinum (PDB entry 3QDF(39)) ... |
| 3 | 3sbx | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4979012/ | Structural basis for cytokinin production by LOG from Corynebacterium glutamicum | 2016 | H Seo, S Kim, HY Sagong, HF Son, KS Jin - Scientific , 2016 - ncbi.nlm.nih.gov | ... also showed that LOGs from C. purpurea (CpLOG, PDB CODE 5AJT, Z-score 26.8) and M.marinum (MmLOG, PDB CODE 3SBX, Z-score ... To compare CgLOG with other LOGs, wesuperposed the CgLOG structure with other LOG proteins such as AtLOG3, CpLOG, and ... |
| 4 | 3nrr | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13662/full | Structural analysis of dihydrofolate reductases enables rationalization of antifolate binding affinities and suggests repurposing possibilities | 2016 | A Bhosle, N Chandra - FEBS Journal, 2016 - Wiley Online Library | ... due to conservation of overall structure makes it feasible to study variation at each ... C9 (P.falciparum:Tyr 57 and Phe 223; PDB ID: 1J3I), B.bovis (Phe 40 and Phe 161; PDB ID: 3NRR), C.hominis(Phe 35 and Phe 172; PDB ID: 3HJ3) and E.faecalis (Phe 30 and Tyr ... |
| 5 | 3rqi | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b00645 | A variable active site residue influences the kinetics of response regulator phosphorylation and dephosphorylation | 2016 | RM Immormino, RE Silversmith, RB Bourret - Biochemistry, 2016 - ACS Publications | ... reaction kinetics by altering access to the active site while not perturbing overall protein structure . ... Collectively, our biochemical and structural analyses indicate that position T+1 affects access to the ... (A) Surface representation of the E. coli CheY active site ( PDB entry 1fqw). ... |
| 6 | 3rd5 | - | http://www.sciencedirect.com/science/article/pii/S1011134416302433 | Multiple active site residues are important for photochemical efficiency in the light-activated enzyme protochlorophyllide oxidoreductase (POR) | 2016 | BRK Menon, SJO Hardman, NS Scrutton - of Photochemistry and , 2016 - Elsevier | ... A putative uncharacterized SDR protein (PDB id: 3RD5) that has the highest sequence identitywith POR was used as the reference structure and the sieving procedure removed 68% of the3RD5 residues at 1.8 sieving level using Mustang-MR sieving server. ... |
| 7 | 4efi | - | https://patents.google.com/patent/US20160201095A1/en | Methods for the site-selective introduction of halogen into natural products | 2016 | MCY Chang, MC Walker, BW Thuronyi- US Patent App. 14/913,601, 2016 - Google Patents | domain. The NphT7 structure was predicted using Phyre2 (Kelley, et al., Nat. Prot., 4:363-371 (2009)) and based on a type III 3-oxoacyl-(acyl-carrier protein) synthase from Burkholderia xenovorans ( PDB ID 4EFI ). Despite |
| 8 | 3r9r | - | http://www.postepybiochemii.pl/pdf/3_2016/262-272.pdf | Structure-guided, target-based drug discoveryexploiting genome information from HIV to mycobacterial infections | 2016 | S Malhotra, SE Thomas, MB Ochoa - Postepy , 2016 - postepybiochemii.pl | ... purC structure from Saccharomyces cerevisiae (PDB ID: 1OBD) and in pink is the recentapo-form crystal structure (PDB ID: 3R9R) of purC ... The modelling pipeline begins with identificationof structural homolog(s) using a sequence-structure homology recogni- tion approach ... |
| 9 | 3glq | - | http://link.springer.com/article/10.1007/s12154-016-0155-7 | Structural insight into binding mode of inhibitor with SAHH of Plasmodium and human: interaction of curcumin with anti-malarial drug targets | 2016 | DB Singh, S Dwivedi - Journal of chemical biology, 2016 - Springer | ... Structural superimposition. MatchMaker module of UCSF Chimera 1.9 was used to create asuperposition of PDB structures [14]. ... The six SAHH structure from human (1LI4), P. falciparum(1V8B), M. tuberculosis (2ZJO), B. pseudomallei (3GLQ), T. brucei (3H9U), and B ... |
| 10 | 3gwc | - | https://pdfs.semanticscholar.org/756c/21ba7ab35e0016d697910450710130b7af99.pdf | Similarity in the Amino Acid Sequences of Mycobacterium tuberculosis Protein Targets Involved in Binding Sites of Docking with Thiacetazone | 2016 | M Mafakheri, S Sardari- Pharm Anal Acta, 2016 - pdfs.semanticscholar.org | reviewed and well known M. tuberculosis protein target was chosen (Table 1) then they were downloaded in pdb format from 68 3GWC Transferase -6.24 RRRHHHHM 21. A Structural View of Biology, An Information Portal to 124286 Biological Macromolecular Structures . 22 |